View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_low_1 (Length: 1057)
Name: NF8272_low_1
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 715; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 302 - 1039
Target Start/End: Original strand, 40220825 - 40221563
Alignment:
| Q |
302 |
tgaaccaaactcatgtagcagcactggggtggaccctgtttgtacaacaaaatgaaatgctcctgtagagcaaataaccggggcttgaaagccagccacc |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220825 |
tgaaccaaactcatgtagcagcactggggtggaccctgtttgtacaacaaaatgaaatgctcctgtagagcaaataaccggggcttgaaagccagccacc |
40220924 |
T |
|
| Q |
402 |
tatcatgtttcacaagtctttgaacccaaggctgcttcagaaccaaatttgttctcatccttcaacacaaatgctaggttcagaagtggactctccaatg |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220925 |
tatcatgtttcacaagtctttgaacccaaggctgcttcagaaccaaatttgttctcatccttcaacacaaatgctaggttcagaagtggactctccaatg |
40221024 |
T |
|
| Q |
502 |
tgtggctcaacaggagaaggcaatgctagaagccttcctttttgcgcacgtggtggaagatgctttgtgggttttctggatggaacattccagggcaaga |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40221025 |
tgtggctcaacaggagaaggcaatgctagaagccttcctttttgcgcacgtggtggaagatgctttgtgggttttctggaaggaacattccagggcaaga |
40221124 |
T |
|
| Q |
602 |
agactccagtaccacccccagccagtttgcggggattcactgccataggacgcataggtgtcagcatcatcatcgggccaggaagcattccccatttggg |
701 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40221125 |
agactccagtaccacccccagccagtttgcggggattcactgccataggacgcataggtgtcagcatcatcatcgggccgggaagcattccccatttggg |
40221224 |
T |
|
| Q |
702 |
catcatcatgtccataccatcatagccacaacttaaagctccatttggcaaagcatacgggttagcgatggcaggttgccacatagtcattgcgcttgtc |
801 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221225 |
catcatcatgtccataccatcatagccacagcttaaagctccatttggcaaagcatacgggttagcgatggcaggttgccacatagtcattgcgcttgtc |
40221324 |
T |
|
| Q |
802 |
atggtaggagttggtgattgacattgattggagtctggcctcactctgaagaaggtgatgcttacccttctgttaggagatggacacatgacatgccttg |
901 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221325 |
atggtaggagttggtgattgacattgattggagtctggcctcactctgaagaaggtgatgcttacccttctgttaggagatggacacatgacatgccttg |
40221424 |
T |
|
| Q |
902 |
ccatgtcagcactgtttcctctcatcaccagaagagacctgtaaaatcaagtggttatttatcagttagtactgtacaatgactgtctcaatttcctcgc |
1001 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40221425 |
ccatgtcagcactgtttcctctcatcaccagaagagacctgtaaaatcaagtggttatttatcagttagtactgtacaatgattgtctcaatttcctcgc |
40221524 |
T |
|
| Q |
1002 |
acgagatattc-aaaaaatatctcagcaggtaactatac |
1039 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
40221525 |
acgagatattcaaaaaaatatctcagcaggtaactatac |
40221563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 40220538 - 40220758
Alignment:
| Q |
17 |
acatcatatggaatagagaagcataaataaataatacgcatcccggtgacgatttgattcgtctaagaagatggttaacttaaaatatcattcttacaaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220538 |
acatcatatggaatagagaagcataaataaataatacgcatcccggtgacgatttgattcgtctaagaagatggttaacttaaaatatcattcttacaaa |
40220637 |
T |
|
| Q |
117 |
ctgatatatcagagataattcacactcttcaattttgaaagctcgactattctactaaagctcttactgtgactggcaaacataaaaaccgttgtgaact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220638 |
ctgatatatcagagataattcacactcttcaattttgaaagcttgactattctactaaagctcttactgtgactggcaaacataaaaaccgttgtgaact |
40220737 |
T |
|
| Q |
217 |
ccactagattctactctatcc |
237 |
Q |
| |
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||||||||||||||||||||| |
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| T |
40220738 |
ccactagattctactctatcc |
40220758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 841 - 942
Target Start/End: Original strand, 37507910 - 37508011
Alignment:
| Q |
841 |
ctcactctgaagaaggtgatgcttacccttctgttaggagatggacacatgacatgccttgccatgtcagcactgtttcctctcatcaccagaagagacc |
940 |
Q |
| |
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|||||||| |||||||||||||| ||||| |||||| ||||||| ||| ||||| |||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
37507910 |
ctcactctaaagaaggtgatgctcaccctcttgttagtggatggacgcatcacatggcttgccatgtcagcactgtttcctttcatcactaaaagagacc |
37508009 |
T |
|
| Q |
941 |
tg |
942 |
Q |
| |
|
|| |
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|
| T |
37508010 |
tg |
37508011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 409 - 544
Target Start/End: Original strand, 18947719 - 18947855
Alignment:
| Q |
409 |
tttcacaagtctttgaacccaaggctgcttcagaaccaaatttgttctcatccttcaacacaaatgctagg-ttcagaagtggactctccaatgtgtggc |
507 |
Q |
| |
|
||||||| || |||||||||||| ||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||| || ||| |
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| T |
18947719 |
tttcacatgtatttgaacccaagctatcttgagaactaaatttgttctcatccttcaacacaaactttaggtttcagaagtggtctctcccatatgttct |
18947818 |
T |
|
| Q |
508 |
tcaacaggagaaggcaatgctagaagccttccttttt |
544 |
Q |
| |
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|||||| | ||||||||||||||| |||||| ||||| |
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| T |
18947819 |
tcaacatgtgaaggcaatgctagacgccttctttttt |
18947855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 446 - 545
Target Start/End: Complemental strand, 18993873 - 18993773
Alignment:
| Q |
446 |
aaatttgttctcatccttcaacacaaatgctag-gttcagaagtggactctccaatgtgtggctcaacaggagaaggcaatgctagaagccttccttttt |
544 |
Q |
| |
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||||||| ||||||||||||||||||| ||| ||||||||||| |||||| |||||| | |||||| |||||||| |||||||| ||||||| ||| |
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| T |
18993873 |
aaatttgctctcatccttcaacacaaacattagatttcagaagtggcctctcccatgtgttgttcaacatgagaaggcgatgctagagaccttcctattt |
18993774 |
T |
|
| Q |
545 |
g |
545 |
Q |
| |
|
| |
|
|
| T |
18993773 |
g |
18993773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 409 - 544
Target Start/End: Complemental strand, 18968935 - 18968799
Alignment:
| Q |
409 |
tttcacaagtctttgaacccaaggctgcttcagaaccaaatttgttctcatccttcaacacaaatgctag-gttcagaagtggactctccaatgtgtggc |
507 |
Q |
| |
|
||||||| || |||||||||||| ||| ||||| |||||||||||||| || |||||||| ||| ||||||||||| |||||| |||||| |
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| T |
18968935 |
tttcacatgtatttgaacccaagctatcttgagaactaaatttgttctcattgttgaacacaaactttagatttcagaagtggtctctcccatgtgttct |
18968836 |
T |
|
| Q |
508 |
tcaacaggagaaggcaatgctagaagccttccttttt |
544 |
Q |
| |
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|||||| | ||||||||||||||||| |||| ||||| |
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|
| T |
18968835 |
tcaacatgtgaaggcaatgctagaaggcttctttttt |
18968799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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