View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_low_10 (Length: 292)
Name: NF8272_low_10
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 53278945 - 53279209
Alignment:
| Q |
1 |
gtttgttgagaaactatttgttttcattaggtataaaattgatctgaaaaattgtacatataaattagttttggttttataatggcaggttataaagtcg |
100 |
Q |
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| T |
53278945 |
gtttgttgagaaactatttgttttcattaggtataaaattgatctgaaa---------tataaattagttttggttttataatggcaggttataaagtcg |
53279035 |
T |
|
| Q |
101 |
ttgacaaaggatgttgtggcacaggagcagtagaggtagcagtgttatgcaaccaatttgctacccaatgtgaagatgttagggactacgttttctggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53279036 |
ttgacaaaggatgttgtggcacaggagcagtagaggtagcagtgttatgcaaccaatttgctacccaatgtgaagatgttagggactacgttttctggga |
53279135 |
T |
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| Q |
201 |
cagttttcatccctcggagagtgtttacagcaagctcttaaatcctcttcttcgaaaatatatacaccagttct |
274 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53279136 |
cagttttcatccctcagagagtgtttacagcaagctcttaaatcctcttcttcgaaaatatatacaccagttct |
53279209 |
T |
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