View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_low_14 (Length: 252)
Name: NF8272_low_14
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_low_14 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 5690122 - 5689884
Alignment:
| Q |
14 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
113 |
Q |
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| T |
5690122 |
atgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
5690023 |
T |
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| Q |
114 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
213 |
Q |
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| T |
5690022 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
5689923 |
T |
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| Q |
214 |
gatttgccacaagagcttcttggtaagcatgttgagcct |
252 |
Q |
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| T |
5689922 |
gatttgccacaagagcttcttggtaaacatgttgagcct |
5689884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 25914803 - 25914568
Alignment:
| Q |
14 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
113 |
Q |
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| T |
25914803 |
atgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaactgtgactgg |
25914707 |
T |
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| Q |
114 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
213 |
Q |
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| T |
25914706 |
tggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaagggtattaag |
25914607 |
T |
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| Q |
214 |
gatttgccacaagagcttcttggtaagcatgttgagcct |
252 |
Q |
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| T |
25914606 |
gatttgccacaagagcttcttggtaaaccagttgagcct |
25914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 6792565 - 6792803
Alignment:
| Q |
14 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
113 |
Q |
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|||||||||| || ||||| |||||||||| |||||||| | | || ||||| | |||||||| ||| ||||| |||||| | ||||||||||| |
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| T |
6792565 |
atgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgactgg |
6792664 |
T |
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| Q |
114 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
213 |
Q |
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||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||||| || || ||||||||| | | ||||||||| |
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| T |
6792665 |
tggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtattaag |
6792764 |
T |
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| Q |
214 |
gatttgccacaagagcttcttggtaagcatgttgagcct |
252 |
Q |
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| T |
6792765 |
gatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
109 |
actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
208 |
Q |
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|||||||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | | |||| |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
209 |
ttaaggatttgccaca |
224 |
Q |
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|||||||||||||||| |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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