View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8272_low_15 (Length: 240)

Name: NF8272_low_15
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8272_low_15
NF8272_low_15
[»] chr4 (37 HSPs)
chr4 (42-240)||(32966529-32966728)
chr4 (41-102)||(50503252-50503313)
chr4 (54-108)||(4390776-4390830)
chr4 (42-102)||(30561432-30561492)
chr4 (49-113)||(45780100-45780164)
chr4 (52-107)||(20148066-20148121)
chr4 (176-227)||(32955426-32955477)
chr4 (40-110)||(5460076-5460146)
chr4 (61-111)||(21370566-21370616)
chr4 (49-107)||(45906887-45906945)
chr4 (49-107)||(53407908-53407966)
chr4 (61-110)||(4516511-4516560)
chr4 (27-108)||(11051106-11051187)
chr4 (61-110)||(11151263-11151312)
chr4 (49-102)||(12233315-12233368)
chr4 (27-108)||(40496773-40496854)
chr4 (48-108)||(22431541-22431601)
chr4 (58-102)||(33116827-33116871)
chr4 (74-110)||(40120667-40120703)
chr4 (61-108)||(4392067-4392114)
chr4 (61-108)||(7707138-7707185)
chr4 (61-108)||(8942640-8942687)
chr4 (61-108)||(22037694-22037741)
chr4 (61-108)||(27184969-27185016)
chr4 (40-107)||(33510111-33510178)
chr4 (40-107)||(37971045-37971112)
chr4 (61-108)||(43225062-43225109)
chr4 (61-108)||(56373209-56373256)
chr4 (61-107)||(27397100-27397146)
chr4 (61-107)||(29414263-29414309)
chr4 (61-111)||(37114633-37114683)
chr4 (62-111)||(4354957-4355006)
chr4 (61-110)||(8829135-8829184)
chr4 (62-107)||(11601438-11601483)
chr4 (64-113)||(42123864-42123913)
chr4 (61-110)||(56269411-56269460)
chr4 (49-109)||(31679604-31679664)
[»] chr1 (27 HSPs)
chr1 (40-110)||(7780486-7780556)
chr1 (27-108)||(40720218-40720299)
chr1 (49-108)||(13120940-13120999)
chr1 (41-96)||(41004345-41004400)
chr1 (27-109)||(42613431-42613513)
chr1 (61-110)||(36300422-36300471)
chr1 (49-114)||(41150561-41150626)
chr1 (61-109)||(44910595-44910643)
chr1 (61-116)||(1918821-1918876)
chr1 (33-104)||(25135738-25135809)
chr1 (61-108)||(29379775-29379822)
chr1 (61-108)||(29586931-29586978)
chr1 (49-100)||(33152698-33152749)
chr1 (61-108)||(39827337-39827384)
chr1 (61-108)||(42063611-42063658)
chr1 (61-107)||(15314018-15314064)
chr1 (62-108)||(19898241-19898287)
chr1 (61-107)||(26205072-26205118)
chr1 (62-108)||(29703526-29703572)
chr1 (61-107)||(30780064-30780110)
chr1 (61-111)||(32367706-32367756)
chr1 (61-107)||(33561201-33561247)
chr1 (62-107)||(7710311-7710356)
chr1 (61-109)||(27642569-27642617)
chr1 (48-108)||(34319295-34319355)
chr1 (65-109)||(36838021-36838065)
chr1 (74-110)||(49219786-49219822)
[»] chr6 (20 HSPs)
chr6 (35-107)||(21897482-21897554)
chr6 (28-107)||(5300925-5301004)
chr6 (49-111)||(28077219-28077281)
chr6 (61-111)||(34684368-34684418)
chr6 (61-110)||(28721112-28721161)
chr6 (61-109)||(1805719-1805767)
chr6 (61-108)||(559081-559128)
chr6 (61-108)||(2443194-2443241)
chr6 (33-111)||(6830781-6830866)
chr6 (33-108)||(22756993-22757068)
chr6 (61-108)||(27719941-27719988)
chr6 (61-107)||(6709047-6709093)
chr6 (61-111)||(7316926-7316976)
chr6 (61-107)||(12140154-12140200)
chr6 (49-107)||(32732541-32732599)
chr6 (61-107)||(34232222-34232268)
chr6 (61-102)||(31451307-31451348)
chr6 (28-69)||(33454492-33454533)
chr6 (62-107)||(34904682-34904727)
chr6 (74-110)||(10856875-10856911)
[»] chr5 (33 HSPs)
chr5 (12-102)||(36027269-36027359)
chr5 (49-108)||(5997247-5997306)
chr5 (28-110)||(8285543-8285625)
chr5 (54-99)||(33695364-33695409)
chr5 (40-108)||(36686568-36686636)
chr5 (61-108)||(2179492-2179539)
chr5 (49-112)||(12362952-12363015)
chr5 (49-108)||(13227902-13227961)
chr5 (42-109)||(22976390-22976457)
chr5 (62-108)||(35640687-35640733)
chr5 (42-107)||(5381186-5381251)
chr5 (62-107)||(6603264-6603309)
chr5 (61-108)||(2672172-2672219)
chr5 (61-108)||(8023285-8023332)
chr5 (49-108)||(32383589-32383648)
chr5 (61-108)||(39276169-39276216)
chr5 (74-112)||(1710550-1710588)
chr5 (48-102)||(2498428-2498482)
chr5 (54-108)||(11061819-11061873)
chr5 (61-107)||(12714052-12714098)
chr5 (61-107)||(12775280-12775326)
chr5 (61-107)||(13156239-13156285)
chr5 (58-108)||(15531199-15531249)
chr5 (62-108)||(25871661-25871707)
chr5 (61-107)||(43403233-43403279)
chr5 (61-110)||(1175564-1175613)
chr5 (49-102)||(9586489-9586542)
chr5 (61-102)||(15444199-15444240)
chr5 (33-102)||(26698350-26698419)
chr5 (33-102)||(26968082-26968151)
chr5 (61-110)||(35235078-35235127)
chr5 (61-110)||(35235892-35235941)
chr5 (61-109)||(16856319-16856367)
[»] chr2 (26 HSPs)
chr2 (27-108)||(38843561-38843642)
chr2 (28-108)||(5519358-5519438)
chr2 (40-108)||(8705836-8705904)
chr2 (40-108)||(43506897-43506965)
chr2 (61-108)||(24401447-24401494)
chr2 (49-108)||(37000220-37000279)
chr2 (61-108)||(39168511-39168558)
chr2 (49-98)||(650148-650197)
chr2 (48-109)||(2046465-2046526)
chr2 (42-111)||(4056684-4056753)
chr2 (42-107)||(7399618-7399683)
chr2 (49-110)||(9887720-9887781)
chr2 (40-109)||(31615709-31615778)
chr2 (49-110)||(43136388-43136449)
chr2 (61-109)||(28381977-28382025)
chr2 (61-108)||(2545751-2545798)
chr2 (27-110)||(13762509-13762592)
chr2 (48-107)||(24020632-24020691)
chr2 (40-111)||(41796067-41796138)
chr2 (61-107)||(4452855-4452901)
chr2 (64-110)||(5040536-5040582)
chr2 (61-107)||(13527267-13527313)
chr2 (61-107)||(36711838-36711884)
chr2 (61-102)||(18710917-18710958)
chr2 (40-108)||(9052362-9052430)
chr2 (54-102)||(26912381-26912429)
[»] chr8 (16 HSPs)
chr8 (33-108)||(44157993-44158068)
chr8 (12-78)||(36590971-36591037)
chr8 (61-110)||(10619612-10619661)
chr8 (40-108)||(17116265-17116333)
chr8 (49-108)||(31687410-31687469)
chr8 (28-104)||(18411420-18411489)
chr8 (61-111)||(31582494-31582544)
chr8 (61-110)||(25024126-25024175)
chr8 (61-107)||(32541962-32542008)
chr8 (49-107)||(37586563-37586621)
chr8 (59-104)||(1363143-1363188)
chr8 (61-102)||(28710064-28710105)
chr8 (61-102)||(28717411-28717452)
chr8 (61-102)||(30338304-30338345)
chr8 (61-102)||(39872026-39872067)
chr8 (48-108)||(44318979-44319039)
[»] chr7 (17 HSPs)
chr7 (61-111)||(33203001-33203051)
chr7 (61-112)||(47470378-47470429)
chr7 (43-102)||(47585144-47585203)
chr7 (61-111)||(42375152-42375202)
chr7 (61-110)||(36245741-36245790)
chr7 (61-110)||(42586746-42586795)
chr7 (55-107)||(48730277-48730329)
chr7 (54-109)||(790607-790662)
chr7 (73-104)||(34351304-34351335)
chr7 (49-104)||(45673115-45673170)
chr7 (61-108)||(45686223-45686270)
chr7 (33-107)||(40894146-40894220)
chr7 (61-107)||(43254932-43254978)
chr7 (61-107)||(48831421-48831467)
chr7 (61-102)||(34709979-34710020)
chr7 (61-102)||(46878632-46878673)
chr7 (52-96)||(11465387-11465431)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-107)||(192787-192880)
[»] chr3 (32 HSPs)
chr3 (49-102)||(48943331-48943384)
chr3 (49-109)||(38186519-38186579)
chr3 (42-102)||(45369647-45369707)
chr3 (33-108)||(2852637-2852712)
chr3 (35-102)||(24627462-24627529)
chr3 (49-108)||(29080618-29080677)
chr3 (61-107)||(25571149-25571195)
chr3 (61-111)||(40562673-40562723)
chr3 (28-102)||(52226098-52226172)
chr3 (49-102)||(21707847-21707900)
chr3 (61-110)||(29717563-29717612)
chr3 (49-102)||(35500389-35500442)
chr3 (49-110)||(41519302-41519363)
chr3 (61-110)||(55227123-55227172)
chr3 (61-109)||(2579339-2579387)
chr3 (52-108)||(44946523-44946579)
chr3 (41-109)||(46972782-46972850)
chr3 (61-108)||(37528084-37528131)
chr3 (61-108)||(43526493-43526540)
chr3 (11-70)||(46318045-46318104)
chr3 (61-103)||(4241052-4241094)
chr3 (62-116)||(40479397-40479451)
chr3 (61-103)||(44846364-44846406)
chr3 (69-102)||(1265226-1265259)
chr3 (61-110)||(19947655-19947704)
chr3 (14-111)||(32981845-32981942)
chr3 (61-110)||(37089029-37089078)
chr3 (54-102)||(32025583-32025631)
chr3 (62-110)||(45344378-45344426)
chr3 (61-113)||(52165408-52165460)
chr3 (54-102)||(52867516-52867564)
chr3 (74-114)||(54541381-54541421)
[»] scaffold0031 (1 HSPs)
scaffold0031 (49-107)||(129503-129561)
[»] scaffold0418 (1 HSPs)
scaffold0418 (27-108)||(5181-5262)
[»] scaffold0197 (1 HSPs)
scaffold0197 (61-110)||(28361-28410)
[»] scaffold0016 (1 HSPs)
scaffold0016 (40-108)||(92842-92910)
[»] scaffold0349 (1 HSPs)
scaffold0349 (61-108)||(9363-9410)
[»] scaffold0116 (1 HSPs)
scaffold0116 (61-108)||(25664-25711)
[»] scaffold0246 (1 HSPs)
scaffold0246 (61-107)||(7797-7843)
[»] scaffold0173 (1 HSPs)
scaffold0173 (61-107)||(22220-22266)
[»] scaffold0122 (1 HSPs)
scaffold0122 (61-107)||(11783-11829)
[»] scaffold0041 (1 HSPs)
scaffold0041 (33-107)||(72064-72138)
[»] scaffold0027 (1 HSPs)
scaffold0027 (61-107)||(41063-41109)
[»] scaffold0362 (1 HSPs)
scaffold0362 (49-110)||(6157-6218)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 32966529 - 32966728
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc-ttaaacaaacttttttccctttcgcaaaagact 140  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  32966529 atcagctatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcccttaaacacacttttttccctttcccaaaagact 32966628  T
Q  141 tatacttggtagatttttaaaaatgttatttgtggtttttctgcagtggtcatgggaaacaatagtcatggggatttccttcttggtaatacttctgctc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32966629 tatacttggtagatttttaaaaatgttatttgtggtttttctgcagtggtcatgggaaacaatagtcatggggatttccttcttggtaatacttctgctc 32966728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 50503252 - 50503313
Alignment:
Q  41 tatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||||||||| |||||| ||||||||||| |||||| ||||||| |||||||||||||||    
T  50503252 tatcagccatcagctataagctatcagctagcttatcagctatccgctatttttaccaaaca 50503313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 4390830 - 4390776
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  4390830 ctataagctatcagctagcttatcaactatccgctatttttaccaaacagagcct 4390776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 30561492 - 30561432
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||| ||||||||||| |||| |||||| |||||| ||||||| |||||||||||||||    
T  30561492 atcagctatcaactataagctataagctagcttatcagctatccgctatttttaccaaaca 30561432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 45780164 - 45780100
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaac 113  Q
    |||| |||||| ||||||||||| ||||||  |||||| ||||||||||||||| ||||||||||    
T  45780164 atcagctataagctatcagctagcttatcagttatccgctatttttaccaaacagagccttaaac 45780100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 20148121 - 20148066
Alignment:
Q  52 aactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||||||| ||| ||||||| ||||||||| ||||||||||||| ||||    
T  20148121 aactataaactatcaactaatttatcagctatccgttgtttttaccaaacagagcc 20148066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 32955426 - 32955477
Alignment:
Q  176 tttttctgcagtggtcatgggaaacaatagtcatggggatttccttcttggt 227  Q
    |||||||||||||||||||| |||||||||| ||||| |||| |||||||||    
T  32955426 tttttctgcagtggtcatggcaaacaatagtgatgggaatttgcttcttggt 32955477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 5460146 - 5460076
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||| ||| |||| |||||| ||||||||||| |||| | ||||||| ||||||||||||||| |||||||    
T  5460146 ctataagctatcagctataagctatcagctagcttataagctatccgctatttttaccaaacagagcctta 5460076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 21370566 - 21370616
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||    
T  21370566 ctatcagctagcttatcagctatccgctatttttaccaaacagagccttaa 21370616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 45906887 - 45906945
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  45906887 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcc 45906945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 53407908 - 53407966
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  53407908 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcc 53407966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 4516560 - 4516511
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| ||||||  |||||||||||||||||||||| |||||||    
T  4516560 ctatcagctagcttatcagttatccgttatttttaccaaacagagcctta 4516511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 11051106 - 11051187
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||||| ||||||| ||||| |||||| | ||||||||| |||| | ||||||  ||||| |||||||||||||||    
T  11051106 catcagctataagctatcagtcatcagctataatccatcagctagcttataagctatccactatttctaccaaacaaagcct 11051187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 11151312 - 11151263
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  11151312 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 11151263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 12233368 - 12233315
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||||||| |||||    
T  12233368 atcagctataagctatcagctagcttatcaactatccgctatttttactaaaca 12233315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 40496854 - 40496773
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||| | ||||||| | ||| |||||| ||||||||||| |||||| ||| ||| ||||||||||||||| |||||    
T  40496854 catcagctatcagctatcagtcgtcagctataagctatcagctagcttatcagctaaccgctatttttaccaaacagagcct 40496773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 22431541 - 22431601
Alignment:
Q  48 catcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||| ||||||||||||| |||| | ||||||| ||||||||||||||| |||||    
T  22431541 catcagctatcaactatcagctagcttataagctatccgctatttttaccaaacagagcct 22431601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 33116827 - 33116871
Alignment:
Q  58 aaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||    
T  33116827 aaactatcagctagcttatcagctatccgctatttttaccaaaca 33116871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 40120667 - 40120703
Alignment:
Q  74 tatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40120667 tatcaactatccgttatttttaccaaacagagcctta 40120703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 4392114 - 4392067
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  4392114 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 4392067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 7707138 - 7707185
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  7707138 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 7707185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 8942640 - 8942687
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  8942640 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 8942687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 22037741 - 22037694
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  22037741 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 22037694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 27185016 - 27184969
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  27185016 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 27184969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 33510111 - 33510178
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||||| |||||| ||||||||||| ||||||   ||||||||||||||| ||||| ||||    
T  33510111 ctataagccatcagctataagctatcagctagcttatcagtcatccgttatttttacaaaacagagcc 33510178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 37971045 - 37971112
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||||| |||| ||| || |||||| |||  |||||| ||||||| ||||||||||||||||||||    
T  37971045 ctatcagctatcagctaaaagctatcaactaacttatcagctatccgctatttttaccaaacaaagcc 37971112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 43225109 - 43225062
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  43225109 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 43225062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 56373209 - 56373256
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  56373209 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 56373256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 27397146 - 27397100
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  27397146 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 27397100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 29414263 - 29414309
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  29414263 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 29414309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 37114683 - 37114633
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||||| ||||| | ||||||||||||||| ||||||||    
T  37114683 ctatcagctagcttatcagctatctgctatttttaccaaacagagccttaa 37114633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 4355006 - 4354957
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    |||||||||| |||||| ||||||||||||||||| ||||| ||| ||||    
T  4355006 tatcagctagcttatcagctatccgttatttttacgaaacagagctttaa 4354957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 8829184 - 8829135
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||| | ||||||| ||||||||||||||| |||||||    
T  8829184 ctatcagctagcttattagctatccgctatttttaccaaacagagcctta 8829135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 11601438 - 11601483
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  11601438 tatcagctagcttatcagctatccgctatttttaccaaacagagcc 11601483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 42123913 - 42123864
Alignment:
Q  64 tcagctagtttatcaactatccgttatttttaccaaacaaagccttaaac 113  Q
    |||| ||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  42123913 tcagttagcttatcagctatccgctatttttaccaaacaaagcctaaaac 42123864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 56269460 - 56269411
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||| | ||||||| ||||||||||||||| |||||||    
T  56269460 ctatcagctagcttataagctatccgctatttttaccaaacagagcctta 56269411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 31679604 - 31679664
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||| ||| ||||||| |||||  |||||| ||||||| ||||||||||||||| ||||||    
T  31679604 atcagctaaaaactattagctaacttatcagctatccgctatttttaccaaacagagcctt 31679664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 7780556 - 7780486
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  7780556 ctatcagccatcagctataagctatcagctagcttataaactatccgttatttttaccaaacagagcctta 7780486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 40720218 - 40720299
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||||| |||||| |||||| |||||| ||||||||||| ||||||   ||||||||||| ||||||||| |||||    
T  40720218 catcagctataagctatcaaccatcagctataagctatcagctagcttatcagtcatccgttatttctaccaaacagagcct 40720299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 13120999 - 13120940
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  13120999 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcct 13120940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 41004400 - 41004345
Alignment:
Q  41 tatcagccatcaactataaactatcagctagtttatcaactatccgttatttttac 96  Q
    |||||| ||||| ||||||| |||||||||  ||||||||||||||||||||||||    
T  41004400 tatcagtcatcagctataaaatatcagctatcttatcaactatccgttatttttac 41004345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 42613513 - 42613431
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||| |||||| | ||||||||||| |||||| ||||||||||| ||||||   ||||| |||||||||| |||| ||||||    
T  42613513 catcagctataagccatcagccatcagctataagctatcagctagcttatcagtcatccgctatttttaccgaacatagcctt 42613431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 36300471 - 36300422
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  36300471 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 36300422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 41150626 - 41150561
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaaca 114  Q
    |||| ||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||||| |||||    
T  41150626 atcagctaaaaactatcagctaacttatcagctatccgctatttttaccaaacagagcctaaaaca 41150561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 44910595 - 44910643
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  44910595 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctt 44910643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1918821 - 1918876
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaacaaa 116  Q
    |||||| |||| |||||| ||||||| ||||||||||||||| |||||||| ||||    
T  1918821 ctatcaactagcttatcagctatccgctatttttaccaaacagagccttaatcaaa 1918876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 25135738 - 25135809
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaa 104  Q
    ||||||||||| || ||| | |||||| ||||||| |||||||| |  |||||| |||||||||||||||||    
T  25135738 ctataaactattagtcatgagctataagctatcagttagtttataagttatccgctatttttaccaaacaaa 25135809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 29379775 - 29379822
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  29379775 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 29379822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 29586931 - 29586978
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  29586931 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 29586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 33152698 - 33152749
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaa 100  Q
    |||| |||||||||||||||||| |||||| ||||||| |||||||| ||||    
T  33152698 atcagctataaactatcagctagcttatcagctatccgctatttttatcaaa 33152749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 39827337 - 39827384
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  39827337 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 39827384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 42063658 - 42063611
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  42063658 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 42063611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 15314018 - 15314064
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  15314018 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 15314064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 19898287 - 19898241
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  19898287 tatcagctagcttatcagctatccgctatttttaccaaacagagcct 19898241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 26205072 - 26205118
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  26205072 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 26205118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 29703572 - 29703526
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  29703572 tatcagctagcttatcagctatccgctatttttaccaaacagagcct 29703526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 30780064 - 30780110
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  30780064 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 30780110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 32367756 - 32367706
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||  |||||| ||||||| ||||||||||||||| ||||||||    
T  32367756 ctatcagctaacttatcagctatccgctatttttaccaaacagagccttaa 32367706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 33561247 - 33561201
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  33561247 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 33561201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 7710356 - 7710311
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  7710356 tatcagctagcttatcagctatccgctatttttaccaaacagagcc 7710311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 27642617 - 27642569
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||||| |||| ||||||| ||||| |||||||||||||||| ||||||    
T  27642617 ctatcaactagcttatcaattatccattatttttaccaaacatagcctt 27642569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 34319295 - 34319355
Alignment:
Q  48 catcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||||| ||||||||||  |||| | ||||||| ||||||||||||||| |||||    
T  34319295 catcagctataagctatcagctaacttataagctatccgctatttttaccaaacagagcct 34319355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 36838065 - 36838021
Alignment:
Q  65 cagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  36838065 cagctagcttatcagctatccgctatttttaccaaacagagcctt 36838021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 49219822 - 49219786
Alignment:
Q  74 tatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  49219822 tatcaactatccgctatttttaccaaacagagcctta 49219786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 21897482 - 21897554
Alignment:
Q  35 ataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||||| || |||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||    
T  21897482 ataaactatcagctataaactataagctatcaactagcttataaactatccgttatttttaccaaacaaagcc 21897554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 5301004 - 5300925
Alignment:
Q  28 atcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||| ||||||| ||||| |||||| |||| |||||| |||| ||||||||| ||||||||||||||| ||||    
T  5301004 atcagctataagctatcagtcatcagctataagctataagctagcttataaactatccgctatttttaccaaacagagcc 5300925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 28077219 - 28077281
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    |||| |||||| ||||||| ||| |||| ||||||||| ||||||||||||||| ||||||||    
T  28077219 atcagctataagctatcaggtagcttataaactatccgctatttttaccaaacagagccttaa 28077281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 34684418 - 34684368
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||    
T  34684418 ctatcagctagcttatcagctatccgctatttttaccaaacagagccttaa 34684368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 28721161 - 28721112
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  28721161 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 28721112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 1805767 - 1805719
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  1805767 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctt 1805719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 559081 - 559128
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  559081 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 559128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 2443194 - 2443241
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  2443194 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 2443241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 6830781 - 6830866
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagc-------tagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    |||||||||||||| |||||||||||||| ||||||       ||| ||||||||||||| |||| ||||||||||| | ||||||    
T  6830781 ctataaactatcagtcatcaactataaaccatcagctattggttagcttatcaactatccattatatttaccaaacagatccttaa 6830866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 22756993 - 22757068
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||| |||||||| |||| |||||| |||| |||||  |||| | ||||||| ||||||||||||||| |||||    
T  22756993 ctataagctatcagctatcagctataagctataagctaacttataagctatccgctatttttaccaaacagagcct 22757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 27719988 - 27719941
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  27719988 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 27719941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 6709093 - 6709047
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  6709093 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 6709047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 7316976 - 7316926
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||| | ||||||| ||||||||||||||| ||||||||    
T  7316976 ctatcagctagcttataagctatccgctatttttaccaaacagagccttaa 7316926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 12140200 - 12140154
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  12140200 ctatcagctagtttatcagttatccgctatttttaccaaacagagcc 12140154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 32732541 - 32732599
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||| |||||| |||| |||||| ||||||| ||||||||||||||| ||||    
T  32732541 atcagctataagctatcatctagcttatcagctatccgctatttttaccaaacagagcc 32732599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 34232268 - 34232222
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  34232268 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 34232222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 31451348 - 31451307
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  31451348 ctatcagctagcttatcagctatccgctatttttaccaaaca 31451307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 33454492 - 33454533
Alignment:
Q  28 atcaactataaactatcagccatcaactataaactatcagct 69  Q
    |||| |||||| ||||||||||||| ||||||||||||||||    
T  33454492 atcagctataagctatcagccatcagctataaactatcagct 33454533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 34904682 - 34904727
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||||||  |||||| ||||||||||||||||||||||| ||||    
T  34904682 tatcagctaacttatcagctatccgttatttttaccaaacagagcc 34904727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 10856875 - 10856911
Alignment:
Q  74 tatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  10856875 tatcagctatccgctatttttaccaaacaaagcctta 10856911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 36027359 - 36027269
Alignment:
Q  12 tcatcagatatcggccatcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||| |||  |||||||||||||| |||||||||||||  ||||| |||||| ||||||||||||  ||||| |||||||||||||||    
T  36027359 tcatcagctataagccatcaactataagctatcagccatcagttataatctatcaactagtttatcaatcatccgctatttttaccaaaca 36027269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 5997306 - 5997247
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  5997306 atcagctataaactatcagctagcttatcagctatccgctatttttaccaaacagagcct 5997247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 8285543 - 8285625
Alignment:
Q  28 atcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||| |||||||||||||| | |||  ||||| |||| |||||| |||||| ||||||| ||||||||||||||| |||||||    
T  8285543 atcagctataaactatcagtcttcacttataagctataagctagcttatcagctatccgctatttttaccaaacagagcctta 8285625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 33695364 - 33695409
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaa 99  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  33695364 ctataaactatcagctagcttatcaactatccgctatttttaccaa 33695409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 36686568 - 36686636
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||| ||| |||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  36686568 ctataagctatcagctaaaaactatcagctagcttatcagctatccgctatttttaccaaacagagcct 36686636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 2179492 - 2179539
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  2179492 ctatcagctagcttatcaactatccgctatttttaccaaacagagcct 2179539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 12363015 - 12362952
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaa 112  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| || ||||||    
T  12363015 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagtcttaaa 12362952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 13227961 - 13227902
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  13227961 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcct 13227902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 22976457 - 22976390
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||||| |||| ||||||||||| |||||| |||||| ||||||| |||||||||||| || ||||||    
T  22976457 atcagctatcagctataaactataagctagcttatcagctatccgctatttttaccaagcagagcctt 22976390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 35640687 - 35640733
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||    
T  35640687 tatcagctagcttatcaactatccgctatttttaccaaacagagcct 35640733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 5381251 - 5381186
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||| |||| |||||| |||| |||||| |||||| ||||||| ||||||||||||||| ||||    
T  5381251 atcagctatcagctataagctataagctagcttatcagctatccgctatttttaccaaacagagcc 5381186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 6603309 - 6603264
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  6603309 tatcagctagtttatcagctatccgctatttttaccaaacagagcc 6603264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 2672172 - 2672219
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  2672172 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 2672219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 8023332 - 8023285
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  8023332 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 8023285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 32383589 - 32383648
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||||||||||||  |||||| ||||||| ||||||||||||||| |||||    
T  32383589 atcagctaaaaactatcagctaacttatcagctatccgctatttttaccaaacagagcct 32383648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 39276169 - 39276216
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  39276169 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 39276216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 1710588 - 1710550
Alignment:
Q  74 tatcaactatccgttatttttaccaaacaaagccttaaa 112  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  1710588 tatcaactatccgctatttttaccaaacagagccttaaa 1710550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 2498428 - 2498482
Alignment:
Q  48 catcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||| |||||||||||||||||  |||||| |||| ||||||||||| ||||||    
T  2498428 catcagctataaactatcagctaacttatcagctatacgttatttttatcaaaca 2498482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 11061873 - 11061819
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||| |||| |||||| |||||| ||||||| ||||||||||||||| |||||    
T  11061873 ctataagctataagctagcttatcagctatccgctatttttaccaaacagagcct 11061819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 12714052 - 12714098
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  12714052 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 12714098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 12775280 - 12775326
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  12775280 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 12775326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 13156285 - 13156239
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  13156285 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 13156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 15531199 - 15531249
Alignment:
Q  58 aaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||||||||||  |||||| ||||||| ||||||||||||||| |||||    
T  15531199 aaactatcagctaacttatcagctatccgctatttttaccaaacagagcct 15531249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 25871707 - 25871661
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||||||||| ||||||| |||||||| |||||| |||||    
T  25871707 tatcagctagtttatcagctatccgctatttttatcaaacagagcct 25871661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 43403233 - 43403279
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  43403233 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 43403279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 1175564 - 1175613
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||| | ||||||| ||||||||||||||| |||||||    
T  1175564 ctatcagctagcttataagctatccgctatttttaccaaacagagcctta 1175613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 9586542 - 9586489
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| ||| |||||||||||||  |||||| ||||||| |||||||||||||||    
T  9586542 atcagctaaaaactatcagctaacttatcagctatccgctatttttaccaaaca 9586489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 15444199 - 15444240
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  15444199 ctatcagctagcttatcagctatccgctatttttaccaaaca 15444240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 26698419 - 26698350
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||| ||||||| ||||| |||||| |||| |||||  ||||||  ||||||||||||||| ||||||    
T  26698419 ctataagctatcagtcatcagctataagctataagctaacttatcagttatccgttatttttatcaaaca 26698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 26968151 - 26968082
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||| ||||||| ||||| |||||| |||| |||||  ||||||  ||||||||||||||| ||||||    
T  26968151 ctataagctatcagtcatcagctataagctataagctaacttatcagttatccgttatttttatcaaaca 26968082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 35235127 - 35235078
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||  |||||| ||||||| ||||||||||||||| |||||||    
T  35235127 ctatcagctaacttatcagctatccgctatttttaccaaacagagcctta 35235078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 35235941 - 35235892
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||  |||||| ||||||| ||||||||||||||| |||||||    
T  35235941 ctatcagctaacttatcagctatccgctatttttaccaaacagagcctta 35235892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 16856367 - 16856319
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||||| |||| |||||| ||||||| ||||||||||||||| ||||||    
T  16856367 ctatcaactagcttatcagctatccgctatttttaccaaacagagcctt 16856319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 38843561 - 38843642
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||||| |||||| | |||| |||||||||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  38843561 catcagctataagctatcaactatcagctataaactatcagctagcttatcagctatccgctgtttttaccaaacaaagcct 38843642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 5519438 - 5519358
Alignment:
Q  28 atcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| |||||| ||||||  |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  5519438 atcagctataagctatcattcatcaactatcagctataagctagtttatcagctatccgttatttttaccaaacagagcct 5519358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 8705904 - 8705836
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||| ||| |||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  8705904 ctataagctatcagctaaaaactatcagctagcttatcagctatccgctatttttaccaaacagagcct 8705836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 43506965 - 43506897
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||| ||| || ||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  43506965 ctataagctatcagctaaaagctatcagctagcttatcagctatccgttatttttaccaaacagagcct 43506897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 24401494 - 24401447
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  24401494 ctatcagctagtttatcagctatccgctatttttaccaaacagagcct 24401447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 37000220 - 37000279
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| ||||||||| |||| |||||||||||||| ||||||||||||||| |||||    
T  37000220 atcagctaaaaactatcaactagcttatcaactatccgctatttttaccaaacagagcct 37000279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 39168511 - 39168558
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||| |||| |||||||||||||||||||||||||||||| |||||    
T  39168511 ctatcaactagcttatcaactatccgttatttttaccaaacagagcct 39168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 650197 - 650148
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttacca 98  Q
    |||| ||| |||||||||||||| |||||||||||||| |||||||||||    
T  650197 atcagctaaaaactatcagctagcttatcaactatccgctatttttacca 650148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 2046526 - 2046465
Alignment:
Q  48 catcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||| ||||||||||| |||||| |||||||  ||||| ||||||||||||||| ||||||    
T  2046526 catcagctataaactataagctagcttatcaatcatccgctatttttaccaaacagagcctt 2046465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 4056684 - 4056753
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||| ||||| |||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||| ||||    
T  4056684 atcagtcatcagctataagctatcagctagcttataagctatccgctatttttaccaaacagagctttaa 4056753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 7399683 - 7399618
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||| |||| |||||| |||| |||||| |||||| ||||||| ||||||||||||||| ||||    
T  7399683 atcagctatcagctataagctataagctagcttatcagctatccgctatttttaccaaacagagcc 7399618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 9887720 - 9887781
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||| |||||| ||||||||||  |||||| ||||||| ||||||||||||||| |||||||    
T  9887720 atcagctataagctatcagctaacttatcagctatccgctatttttaccaaacagagcctta 9887781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 31615778 - 31615709
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||| ||| |||| ||| || |||||||||||||||||| ||||||  ||||||||||||||| ||||||    
T  31615778 ctataagctatcagctaaaagctatcagctagtttatcagctatccactatttttaccaaacagagcctt 31615709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 43136388 - 43136449
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||| |||||| ||||||||||  |||||| ||||||| ||||||||||||||| |||||||    
T  43136388 atcagctataagctatcagctaccttatcagctatccgctatttttaccaaacagagcctta 43136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 28382025 - 28381977
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  28382025 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctt 28381977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 2545798 - 2545751
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  2545798 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 2545751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 13762509 - 13762592
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||| |||||| |||||||| |  | |||||||||||||| ||| |||| | ||||||| |||||||| |||||| |||||||    
T  13762509 catcagctataagctatcagctaaaagctataaactatcagttagcttataagctatccgctatttttatcaaacagagcctta 13762592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 24020632 - 24020691
Alignment:
Q  48 catcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||| |||||||||||||||||| |||| | ||||||  ||||||||||||||| ||||    
T  24020632 catcagctataaactatcagctagcttataagctatccactatttttaccaaacagagcc 24020691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 41796138 - 41796067
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    |||||||| |||| ||| || ||||||||||  |||||| ||||| | ||||||||||||||| ||||||||    
T  41796138 ctatcagctatcagctaaaagctatcagctaacttatcagctatctgctatttttaccaaacagagccttaa 41796067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 4452901 - 4452855
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  4452901 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 4452855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 5040536 - 5040582
Alignment:
Q  64 tcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  5040536 tcagctagcttatcagctatccgctatttttaccaaacagagcctta 5040582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 13527313 - 13527267
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  13527313 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 13527267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 36711884 - 36711838
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  36711884 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 36711838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 18710917 - 18710958
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  18710917 ctatcagctagcttatcagctatccgctatttttaccaaaca 18710958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 9052430 - 9052362
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||||| ||||||  |||||||||| ||||||   ||||| ||||||||||| ||| |||||    
T  9052430 ctatcagccatcagctataagttatcagctagcttatcagtcatccgctatttttaccatacagagcct 9052362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 26912381 - 26912429
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||| |||||||| ||||||  |||||| |||||||||||||||    
T  26912381 ctataaactttcagctagcttatcagttatccgctatttttaccaaaca 26912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 44157993 - 44158068
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||| |||||||| |||| |||||| ||||||||||| |||| | ||||||| ||||||||||||||| |||||    
T  44157993 ctataagctatcagctatcagctataagctatcagctagcttataagctatccgctatttttaccaaacagagcct 44158068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 36590971 - 36591037
Alignment:
Q  12 tcatcagatatcggccatcaactataaactatcagccatcaactataaactatcagctagtttatca 78  Q
    ||||||| |||  ||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||    
T  36590971 tcatcagttataagccatcagctatatactatcagccatcagctataaactatcagctagcttatca 36591037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 10619612 - 10619661
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  10619612 ctatcagctagcttatcaactatccgctatttttaccaaacagagcctta 10619661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 17116265 - 17116333
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||| ||| |||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  17116265 ctataagctatcagctaaaaactatcagctagcttatcagctatccgctatttttaccaaacagagcct 17116333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 31687469 - 31687410
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  31687469 atcagctaaaaactatcagctagcttatcagctatccgctatttttaccaaacagagcct 31687410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 18411420 - 18411489
Alignment:
Q  28 atcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaa 104  Q
    |||| |||||||||||||||||||||||||  |||||       ||||||||||||||| |||||||||||||||||    
T  18411420 atcagctataaactatcagccatcaactatcgactat-------tttatcaactatccgctatttttaccaaacaaa 18411489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 31582494 - 31582544
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||    
T  31582494 ctatcagctagcttatcagctatccgctatttttaccaaacagagccttaa 31582544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 25024126 - 25024175
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  25024126 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 25024175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 32541962 - 32542008
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  32541962 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 32542008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 37586621 - 37586563
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| ||| ||||||||| |||| |||||| |||| || ||||||||||||||||||||    
T  37586621 atcagctaaaaactatcaactagcttatcagctattcgctatttttaccaaacaaagcc 37586563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 1363188 - 1363143
Alignment:
Q  59 aactatcagctagtttatcaactatccgttatttttaccaaacaaa 104  Q
    ||||||||||||  ||||||| |||||| |||||||||||||||||    
T  1363188 aactatcagctaacttatcaattatccgctatttttaccaaacaaa 1363143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 28710064 - 28710105
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  28710064 ctatcagctaacttatcaactatccgctatttttaccaaaca 28710105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 28717411 - 28717452
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  28717411 ctatcagctaacttatcaactatccgctatttttaccaaaca 28717452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 30338304 - 30338345
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||  |||||| |||||||||||||||||||||||    
T  30338304 ctatcagctaacttatcagctatccgttatttttaccaaaca 30338345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 39872026 - 39872067
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  39872026 ctatcagctagcttatcagctatccgctatttttaccaaaca 39872067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 44318979 - 44319039
Alignment:
Q  48 catcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||||| |||||||||  |||| | ||||||| |||||||||||| || |||||    
T  44318979 catcaactataaattatcagctaacttataagctatccgctatttttaccaaccagagcct 44319039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 33203051 - 33203001
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  33203051 ctatcagctagtttatcagctatccgctatttttaccaaacagagccttaa 33203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 47470429 - 47470378
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaa 112  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||||    
T  47470429 ctatcagctagcttatcagctatccgctatttttaccaaacatagccttaaa 47470378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 47585144 - 47585203
Alignment:
Q  43 tcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| ||||| |||||| ||||||||||| |||||| ||||||||| |||||||||||||    
T  47585144 tcagtcatcagctataagctatcagctagcttatcagctatccgttgtttttaccaaaca 47585203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 42375202 - 42375152
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||    
T  42375202 ctatcagctagcttatcagctatccgctatttttaccaaacagagccttaa 42375152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 36245790 - 36245741
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  36245790 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 36245741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 42586795 - 42586746
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  42586795 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 42586746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 48730277 - 48730329
Alignment:
Q  55 tataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||| ||||||||||| |||||||||||||| ||||||| ||||||| ||||    
T  48730277 tataagctatcagctagcttatcaactatccgctatttttcccaaacagagcc 48730329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 790662 - 790607
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||||| |||| |||||| |||||| ||||||| ||||||||||||||| ||||||    
T  790662 ctataagctataagctagcttatcagctatccgctatttttaccaaacagagcctt 790607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 34351335 - 34351304
Alignment:
Q  73 ttatcaactatccgttatttttaccaaacaaa 104  Q
    ||||||||||||||||||||||||||||||||    
T  34351335 ttatcaactatccgttatttttaccaaacaaa 34351304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 45673115 - 45673170
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaa 104  Q
    ||||| ||||| ||||||||||| ||||||  |||||| |||||||||||||||||    
T  45673115 atcaattataagctatcagctagcttatcagatatccgctatttttaccaaacaaa 45673170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 45686270 - 45686223
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  45686270 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 45686223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 40894146 - 40894220
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||| ||||||| ||||| |||||| |||||| |||  ||||||  |||||| ||||||||||||||| ||||    
T  40894146 ctataagctatcagtcatcagctataagctatcaactaacttatcagttatccgctatttttaccaaacatagcc 40894220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 43254932 - 43254978
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  43254932 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 43254978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 48831467 - 48831421
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  48831467 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 48831421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 34709979 - 34710020
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  34709979 ctatcagctagcttatcagctatccgctatttttaccaaaca 34710020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 46878673 - 46878632
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  46878673 ctatcagctagcttatcagctatccgctatttttaccaaaca 46878632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 11465431 - 11465387
Alignment:
Q  52 aactataaactatcagctagtttatcaactatccgttatttttac 96  Q
    |||||| ||||||||||||| |||| ||||||||| |||||||||    
T  11465431 aactatcaactatcagctagcttataaactatccgctatttttac 11465387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 192787 - 192880
Alignment:
Q  14 atcagatatcggccatcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||| |||| | ||| ||||||||||||||||| || | |||||| ||||||||||| |||| | ||||||  ||||||||| ||||||||||    
T  192787 atcagctatcagtcataaactataaactatcagctataagctataagctatcagctagcttataagctatccactatttttacaaaacaaagcc 192880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 48943331 - 48943384
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  48943331 atcagctaaaaactatcagctagtttatcagctatccgctatttttaccaaaca 48943384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 38186519 - 38186579
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  38186519 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcctt 38186579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 45369647 - 45369707
Alignment:
Q  42 atcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||| ||||||||||| ||||||||||  |||||| ||||||| |||||||||||||||    
T  45369647 atcagctatcaactataagctatcagctaacttatcagctatccgctatttttaccaaaca 45369707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 2852637 - 2852712
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||| ||||||| ||||| |||||| |||| || ||| |||||| ||||||| ||||||||||||||| |||||    
T  2852637 ctataagctatcagtcatcagctataagctataagttagcttatcagctatccgctatttttaccaaacagagcct 2852712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 24627529 - 24627462
Alignment:
Q  35 ataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| ||||||| ||||| |||| | |||| |||||| |||||||||||||| |||||||||||||||    
T  24627529 ataagctatcagtcatcatctatcagctataagctagcttatcaactatccgctatttttaccaaaca 24627462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 29080677 - 29080618
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  29080677 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcct 29080618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 25571149 - 25571195
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  25571149 ctatcagctagcttatcagctatccgttatttttaccaaacatagcc 25571195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 40562723 - 40562673
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||||    
T  40562723 ctatcagctagcttatcagctatccgctatttttaccaaacagagccttaa 40562673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 52226098 - 52226172
Alignment:
Q  28 atcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| ||||||  ||||| |||||| |||||||||||||||||| ||||||   ||||| |||||||||||||||    
T  52226098 atcagctataagttatcaaccatcagctataaactatcagctagcttatcagtcatccgctatttttaccaaaca 52226172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 21707847 - 21707900
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| |||||| ||||||||||| |||||| ||||||| |||||||||||||||    
T  21707847 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaaca 21707900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 29717612 - 29717563
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  29717612 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 29717563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 35500389 - 35500442
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||| |||||| ||||||||||| |||||| ||||||| |||||||||||||||    
T  35500389 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaaca 35500442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 41519302 - 41519363
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||| |||||| |||| |||||| |||||| ||||||||| ||||||||||||| |||||||    
T  41519302 atcagctataagctataagctagcttatcagctatccgttttttttaccaaacagagcctta 41519363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 55227172 - 55227123
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  55227172 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 55227123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 2579387 - 2579339
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  2579387 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctt 2579339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 44946579 - 44946523
Alignment:
Q  52 aactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||||||| ||||||||||  |||| | ||||||||||||||||||||||| |||||    
T  44946579 aactataagctatcagctaacttataagctatccgttatttttaccaaacagagcct 44946523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 46972782 - 46972850
Alignment:
Q  41 tatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctt 109  Q
    ||||||| |||| ||| || ||||||||||| |||| | ||||||| ||||||||||||||| ||||||    
T  46972782 tatcagctatcagctaaaagctatcagctagcttataagctatccgctatttttaccaaacagagcctt 46972850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 37528131 - 37528084
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  37528131 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 37528084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 43526493 - 43526540
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||  |||||||||||||| ||||||||||||||| |||||    
T  43526493 ctatcagctaacttatcaactatccgctatttttaccaaacagagcct 43526540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 46318104 - 46318045
Alignment:
Q  11 atcatcagatatcggccatcaactataaactatcagccatcaactataaactatcagcta 70  Q
    |||||||| |||  |||||||||||||||||||||| ||||| |||||| |||| |||||    
T  46318104 atcatcagctataagccatcaactataaactatcagtcatcagctataagctataagcta 46318045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 4241052 - 4241094
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaa 103  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||    
T  4241052 ctatcagctagcttatcagctatccgttatttttactaaacaa 4241094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 40479451 - 40479397
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaacaaa 116  Q
    |||||| ||| |||||| ||||||| ||||||||||||||| ||||| |||||||    
T  40479451 tatcagttagcttatcagctatccgctatttttaccaaacagagcctaaaacaaa 40479397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 44846364 - 44846406
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaa 103  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||    
T  44846364 ctatcagctagcttatcagctatccgctatttttaccaaacaa 44846406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 1265259 - 1265226
Alignment:
Q  69 tagtttatcaactatccgttatttttaccaaaca 102  Q
    ||||||||||||||| ||||||||||||||||||    
T  1265259 tagtttatcaactattcgttatttttaccaaaca 1265226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 19947704 - 19947655
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| ||||||  |||||| ||||||||||||||| |||||||    
T  19947704 ctatcagctagcttatcagttatccgctatttttaccaaacagagcctta 19947655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 32981942 - 32981845
Alignment:
Q  14 atcagatatcggccatcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagccttaa 111  Q
    ||||| |||| | ||||| |||||| ||||||||||| | |||||| ||||||||||  ||||||   ||||  ||||||||||||||| | ||||||    
T  32981942 atcagctatcagtcatcagctataagctatcagccataagctataagctatcagctaacttatcagtcatccactatttttaccaaacagaaccttaa 32981845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 37089029 - 37089078
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||| ||| |||||| ||||||| ||||||||||||||| |||||||    
T  37089029 ctatcagttagcttatcagctatccgctatttttaccaaacagagcctta 37089078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 32025631 - 32025583
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  32025631 ctataagctatcagctagcttataagctatccgctatttttaccaaaca 32025583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 45344426 - 45344378
Alignment:
Q  62 tatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||||||||  |||||| ||||||| ||||||||||||||| |||||||    
T  45344426 tatcagctaacttatcagctatccgctatttttaccaaacagagcctta 45344378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 52165460 - 52165408
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagccttaaac 113  Q
    ||||||| ||| |||| | ||||||| ||||||||||||||| ||||||||||    
T  52165460 ctatcagttagcttataagctatccgctatttttaccaaacagagccttaaac 52165408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 52867564 - 52867516
Alignment:
Q  54 ctataaactatcagctagtttatcaactatccgttatttttaccaaaca 102  Q
    |||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  52867564 ctataagctatcagctagcttataagctatccgctatttttaccaaaca 52867516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 54541421 - 54541381
Alignment:
Q  74 tatcaactatccgttatttttaccaaacaaagccttaaaca 114  Q
    ||||| ||||||||||||||||||||||| ||||| |||||    
T  54541421 tatcagctatccgttatttttaccaaacagagcctaaaaca 54541381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 129561 - 129503
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  129561 atcagctataagctatcagctagcttatcagctatccgctatttttaccaaacagagcc 129503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 5181 - 5262
Alignment:
Q  27 catcaactataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||| |||| | ||||||| | ||| |||||| ||||||||||| |||||| ||| ||| ||||||||||||||| |||||    
T  5181 catcagctatcagctatcagtcgtcagctataagctatcagctagcttatcagctaaccgctatttttaccaaacagagcct 5262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 28410 - 28361
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  28410 ctatcagctagcttatcagctatccgctatttttaccaaacagagcctta 28361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 92910 - 92842
Alignment:
Q  40 ctatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    |||| ||| |||| ||| |||||||||||||  |||||| ||||||| ||||||||||||||| |||||    
T  92910 ctataagctatcagctaaaaactatcagctaacttatcagctatccgctatttttaccaaacagagcct 92842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 9410 - 9363
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  9410 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 9363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 25664 - 25711
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcct 108  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  25664 ctatcagctagcttatcagctatccgctatttttaccaaacagagcct 25711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 7797 - 7843
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  7797 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 7843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 22266 - 22220
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||| |||||| |||||| ||||||||||||||||||||||| ||||    
T  22266 ctataagctagcttatcagctatccgttatttttaccaaacagagcc 22220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 11829 - 11783
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  11829 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 11783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 72138 - 72064
Alignment:
Q  33 ctataaactatcagccatcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    |||||| ||||||| ||||| |||||| |||||| |||  ||||||  |||||| ||||||||||||||| ||||    
T  72138 ctataagctatcagtcatcagctataagctatcaactaacttatcagttatccgctatttttaccaaacatagcc 72064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 41109 - 41063
Alignment:
Q  61 ctatcagctagtttatcaactatccgttatttttaccaaacaaagcc 107  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  41109 ctatcagctagcttatcagctatccgctatttttaccaaacagagcc 41063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 6157 - 6218
Alignment:
Q  49 atcaactataaactatcagctagtttatcaactatccgttatttttaccaaacaaagcctta 110  Q
    |||| ||| ||||||||| |||  |||||| ||||||| ||||||||||||||| |||||||    
T  6157 atcagctaaaaactatcaactaacttatcagctatccgctatttttaccaaacagagcctta 6218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University