View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8272_low_3 (Length: 391)

Name: NF8272_low_3
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8272_low_3
NF8272_low_3
[»] chr7 (1 HSPs)
chr7 (68-360)||(47125658-47125950)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 68 - 360
Target Start/End: Original strand, 47125658 - 47125950
Alignment:
Q  68 tattcagaacttcatgagcagtttgcaaaagatataaaagtctcatgatcttcataatcaatgaataaattcattgattataagtcaaaacttacaccca 167  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  47125658 tattcagaacttcatgagtagtttgcaaaagatataaaagtctcatgatcttcataaacaatgaataaattcattgattataagtcaaaacttatacaca 47125757  T
Q  168 aaaatttcctgcattatataaatagttgatttgataattacaagctcaagtagaaaaagttggagtgcaacttattgatcaatcggacaacggttgtatt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125758 aaaatttcctgcattatataaatagttgatttgataattacaagctcaagtagaaaaagttggagtgcaacttattgatcaatcggacaacggttgtatt 47125857  T
Q  268 ggcttgagtttatctttttagggttctttttcatcattaagtatattaattaattggatcaatgatttaagagttgtccctcaaatttttcat 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125858 ggcttgagtttatctttttagggttctttttcatcattaagtatattaattaattggatcaatgatttaagagttgtccctcaaatttttcat 47125950  T

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