View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8272_low_4 (Length: 390)

Name: NF8272_low_4
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8272_low_4
NF8272_low_4
[»] chr6 (13 HSPs)
chr6 (17-276)||(31080057-31080320)
chr6 (57-201)||(31109907-31110069)
chr6 (309-376)||(6389735-6389802)
chr6 (309-375)||(17168463-17168529)
chr6 (292-364)||(12235502-12235574)
chr6 (309-364)||(34446569-34446624)
chr6 (301-375)||(12086337-12086411)
chr6 (326-375)||(7625115-7625164)
chr6 (322-362)||(19602194-19602234)
chr6 (313-375)||(6299505-6299567)
chr6 (313-375)||(6306315-6306377)
chr6 (302-375)||(7938109-7938183)
chr6 (326-375)||(2153904-2153953)
[»] chr8 (8 HSPs)
chr8 (289-375)||(39820422-39820508)
chr8 (309-370)||(13009493-13009554)
chr8 (301-369)||(1676711-1676779)
chr8 (306-364)||(35431137-35431195)
chr8 (309-375)||(44067509-44067575)
chr8 (311-361)||(13845241-13845291)
chr8 (322-360)||(12559119-12559157)
chr8 (309-375)||(26915240-26915306)
[»] chr3 (14 HSPs)
chr3 (289-375)||(15864826-15864912)
chr3 (309-375)||(14223853-14223919)
chr3 (289-375)||(24205021-24205107)
chr3 (309-362)||(27903638-27903691)
chr3 (302-363)||(25365467-25365528)
chr3 (322-375)||(25074782-25074835)
chr3 (305-375)||(8383250-8383321)
chr3 (304-362)||(21149073-21149132)
chr3 (328-375)||(25652050-25652097)
chr3 (311-361)||(25892467-25892517)
chr3 (304-361)||(3730160-3730217)
chr3 (310-375)||(8903425-8903489)
chr3 (322-362)||(20691325-20691365)
chr3 (322-362)||(40150584-40150624)
[»] chr7 (8 HSPs)
chr7 (312-375)||(4017797-4017860)
chr7 (289-369)||(23751899-23751979)
chr7 (309-370)||(29812664-29812725)
chr7 (309-375)||(43249986-43250052)
chr7 (289-362)||(12278841-12278914)
chr7 (322-361)||(23128674-23128713)
chr7 (312-364)||(22683758-22683810)
chr7 (309-369)||(23930218-23930278)
[»] chr5 (8 HSPs)
chr5 (288-375)||(7997145-7997232)
chr5 (309-361)||(43554528-43554580)
chr5 (309-359)||(39695999-39696049)
chr5 (322-375)||(42469214-42469267)
chr5 (311-361)||(25863211-25863261)
chr5 (311-360)||(31264446-31264495)
chr5 (322-362)||(2577193-2577233)
chr5 (316-360)||(12927662-12927706)
[»] chr2 (10 HSPs)
chr2 (309-362)||(23354652-23354705)
chr2 (312-373)||(10535762-10535823)
chr2 (309-370)||(25544479-25544540)
chr2 (309-362)||(23354995-23355048)
chr2 (309-362)||(24011042-24011095)
chr2 (303-363)||(12748689-12748749)
chr2 (312-362)||(38919212-38919262)
chr2 (322-375)||(37986772-37986825)
chr2 (303-354)||(8300212-8300264)
chr2 (323-375)||(22084997-22085049)
[»] scaffold0199 (1 HSPs)
scaffold0199 (301-369)||(1948-2016)
[»] chr4 (11 HSPs)
chr4 (309-364)||(3144652-3144707)
chr4 (309-375)||(20743278-20743344)
chr4 (289-359)||(49659502-49659573)
chr4 (309-375)||(24343500-24343566)
chr4 (309-359)||(6273953-6274003)
chr4 (293-371)||(16402195-16402273)
chr4 (289-363)||(39507099-39507173)
chr4 (322-375)||(7012059-7012112)
chr4 (305-360)||(8423713-8423769)
chr4 (309-361)||(31243548-31243600)
chr4 (326-370)||(32910549-32910593)
[»] chr1 (7 HSPs)
chr1 (312-375)||(48415728-48415792)
chr1 (309-364)||(42004947-42005002)
chr1 (301-370)||(6573987-6574055)
chr1 (312-364)||(11634127-11634179)
chr1 (327-370)||(23440008-23440051)
chr1 (289-375)||(46348363-46348449)
chr1 (311-364)||(6936402-6936455)
[»] scaffold0049 (1 HSPs)
scaffold0049 (316-358)||(56932-56974)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 31080057 - 31080320
Alignment:
Q  17 gtttgtacaagcg-ggaaatacatagtttcagttnnnnnnngcagaacattagattcttggagaaccaatactggtccatgaccacgaagtaaattgaac 115  Q
    ||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31080057 gtttgtacaagcgaggaaatacatagtttcagttaaaaaaagcagaacattagattcttggagaaccaatactggtccatgaccaccaagtaaattgaac 31080156  T
Q  116 tcaacttctat--gtattgcaaattacaattctcaggttgtataaacttgtgcttgcagacattctaggagatgaaatttgcacataaagttgtacaatt 213  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31080157 tcaacttctatatgtattgcaaattacaattctcaggttgtataaacttgtgcttgcagacattctaggagatgaaatttgcacataaagttgtacaatt 31080256  T
Q  214 tacaaatagttacaaaatgg-nnnnnnntcaacatatcatcatggtacaattaacaagcgtaga 276  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  31080257 tacaaatagttacaaaatggataaaaaatcaacatatcatcatggtacaattaacaagcgtaga 31080320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 31109907 - 31110069
Alignment:
Q  57 gcagaacattagattcttggagaaccaa----tactggtccatgaccacgaagtaaattgaactcaacttctat--------------gtattgcaaatt 138  Q
    ||||||||||||||||||||||||||||    || |||||| |||| || ||||||||||||||||||||||||              ||||||||||||    
T  31109907 gcagaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaacttctatatctatatctatatgtattgcaaatt 31110006  T
Q  139 acaattctcaggttgtataaacttgtgcttgcagacattctaggagatgaaatttgcacataa 201  Q
    |||| ||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  31110007 acaactctcaggttatataaacttatacttgcagacatgctaggagatgaaatttgcacataa 31110069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 6389802 - 6389735
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgtg 376  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtg 6389735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 17168463 - 17168529
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||  ||| |||||||||||||||||| |||||||||||||||||| | || |||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgt 17168529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 12235502 - 12235574
Alignment:
Q  292 cggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    |||||||  ||||||||| |||||||||  |||||||||||| |||||| || ||||||| ||||||||||||    
T  12235502 cggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatccg 12235574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 34446624 - 34446569
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    |||||||||||  |||||||||||| |||||| || ||||||||||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccg 34446569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 12086337 - 12086411
Alignment:
Q  301 gtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||| ||||||||||||  |||||||| ||| |||||| || || ||||||||||||||||| |||| |||||    
T  12086337 gtcggtatccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgtgt 12086411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 7625164 - 7625115
Alignment:
Q  326 attacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||| ||||||||||||| |||||||||||||||||||| |||| |||||    
T  7625164 attatactaaattatatcattttctcaaattattatccgtgtcgacgtgt 7625115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 19602194 - 19602234
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatc 362  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  19602194 tatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 6299567 - 6299505
Alignment:
Q  313 cacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||  ||| |||||| | ||||||||| |||||||||||||||||||  ||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6299505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 6306377 - 6306315
Alignment:
Q  313 cacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||  ||| |||||| | ||||||||| |||||||||||||||||||  ||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6306315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 7938183 - 7938109
Alignment:
Q  302 tcggtgtccgacac-gacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||| ||||| |||| |||| |||||||||||||||||  |||| ||||||||||| | | ||||||||||    
T  7938183 tcggtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgt 7938109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 2153904 - 2153953
Alignment:
Q  326 attacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||||||||| |||||| |||||||| | || ||||||||||    
T  2153904 attacactaaattatatcattttcttaaattattgttcgtgtcggcgtgt 2153953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 39820508 - 39820422
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  39820508 tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgt 39820422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 13009493 - 13009554
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcgg 370  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcgg 13009554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 1676779 - 1676711
Alignment:
Q  301 gtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcg 369  Q
    |||||||||||||||||||  ||||||||||||||| ||| || ||||| |||||||||||||| ||||    
T  1676779 gtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcg 1676711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 35431137 - 35431195
Alignment:
Q  306 tgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    ||||||||||||||  ||||||||||||||| ||| || ||||||||||||||||||||    
T  35431137 tgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccg 35431195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 44067575 - 44067509
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| |||| ||||||||  ||||| || |||||||||||||||||||| ||||||||||    
T  44067575 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgt 44067509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  311 gacacgacatttatgattacactaaattatatcgttttctcaaattattat 361  Q
    |||||||||  ||||||||| |||||||||||| |||||||||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 12559119 - 12559157
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattatta 360  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  12559119 tatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 26915240 - 26915306
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| || |||||||| |||||||| || |||||||||| | ||||||| |||| |||||    
T  26915240 ccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgt 26915306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 15864912 - 15864826
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||| |||||| |||||||||||||||||||  |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  15864912 tgtcagacacgtgtcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgt 15864826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 14223853 - 14223919
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgt 14223919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 375
Target Start/End: Original strand, 24205021 - 24205107
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| ||| ||||||||||||||| |||| ||||||||  ||||| || |||||||||||||||||||| ||||||||||    
T  24205021 tgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgt 24205107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 27903691 - 27903638
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatc 27903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 25365528 - 25365467
Alignment:
Q  302 tcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatcc 363  Q
    |||||||||||||||||| ||||||||||||  |||||| || | |||||||||||||||||    
T  25365528 tcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 25074835 - 25074782
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||| |||||| || |||||||||||||||||| | ||||||||||    
T  25074835 tatgattacactcaattatgtcattttctcaaattattatcggtgtcggcgtgt 25074782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 8383321 - 8383250
Alignment:
Q  305 gtgtccgacac-gacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| |||| |||| |||||||| ||||||||  |||||||||||||||| | | ||||||||||    
T  8383321 gtgtccgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgt 8383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 21149132 - 21149073
Alignment:
Q  304 ggtgtccgaca-cgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    ||||||||||| |||||| | |||||||||| |||||| || ||||||||||||||||||    
T  21149132 ggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 25652050 - 25652097
Alignment:
Q  328 tacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||| ||||||||| |||||||||||||||||||| || |||||||    
T  25652050 tacactgaattatatcattttctcaaattattatccgtgttggcgtgt 25652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 25892517 - 25892467
Alignment:
Q  311 gacacgacatttatgattacactaaattatatcgttttctcaaattattat 361  Q
    |||||||||  |||||||||||| ||||||||| |||||| ||||||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 3730160 - 3730217
Alignment:
Q  304 ggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattat 361  Q
    |||||| |||||||||  |||||||||||| |||||| || || ||||||||||||||    
T  3730160 ggtgtcagacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 8903489 - 8903425
Alignment:
Q  310 cgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||  ||| ||||||||||| ||| || |||||||||| ||||||||| ||||||||||    
T  8903489 cgacacgacacctataattacactaaa-tatgtcattttctcaaaatattatccgtgtcggcgtgt 8903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 20691365 - 20691325
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatc 362  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 40150584 - 40150624
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatc 362  Q
    |||||||||| | ||||||||| ||||||||||||||||||    
T  40150584 tatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 4017797 - 4017860
Alignment:
Q  312 acacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgt 4017860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 23751979 - 23751899
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcg 369  Q
    |||| |||||| |||||||||||||||||||  |||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  23751979 tgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttatcaaattattatccgtgtcg 23751899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 29812664 - 29812725
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcgg 370  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||| || |||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcgg 29812725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 43250052 - 43249986
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| |||| ||||||||  ||||| || |||||||||||||||||||| ||||||||||    
T  43250052 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgt 43249986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 12278914 - 12278841
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    |||| |||||| || ||||||||||||||||  ||| |||||||| |||||| || |||||| |||||||||||    
T  12278914 tgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattatc 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 23128674 - 23128713
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattat 361  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  23128674 tatgattacactgaattatatggttttctcaaattattat 23128713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 22683758 - 22683810
Alignment:
Q  312 acacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    ||||||||  ||||||| |||| ||||||||| | ||||||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccg 22683810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 23930278 - 23930218
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcg 369  Q
    ||||||| |||  |||||||||||| |||||| || ||||||||||||| |||||| ||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcg 23930218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 375
Target Start/End: Original strand, 7997145 - 7997232
Alignment:
Q  288 atgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||| ||| ||||||||||||||| |||| ||||||||  |||||||| |||||||||||||||||||| || |||||||    
T  7997145 atgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgtgt 7997232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattat 361  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 39695999 - 39696049
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattatt 359  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 42469267 - 42469214
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||||||| ||| || |||||||||||||||||||| ||||||||||    
T  42469267 tatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgt 42469214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 25863261 - 25863211
Alignment:
Q  311 gacacgacatttatgattacactaaattatatcgttttctcaaattattat 361  Q
    ||||||||| |||| |||||||| ||||||||| |||||||||||||||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  311 gacacgacatttatgattacactaaattatatcgttttctcaaattatta 360  Q
    ||||||||| ||||||||||||| |||||| || ||||||||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 2577193 - 2577233
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatc 362  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatc 2577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 12927706 - 12927662
Alignment:
Q  316 gacatttatgattacactaaattatatcgttttctcaaattatta 360  Q
    ||||| ||| |||||||||||||||||  ||||||||||||||||    
T  12927706 gacatatataattacactaaattatatgattttctcaaattatta 12927662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 10535762 - 10535823
Alignment:
Q  312 acacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgt 373  Q
    |||||||| ||||||||||||| |||||| || |||||||||||||||||| | ||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 25544540 - 25544479
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcgg 370  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||||||||| || |||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcgg 25544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 23354995 - 23355048
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    |||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||    
T  23354995 ccgacatgacacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 24011095 - 24011042
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    ||||| |||||  ||||||||||||||||||| || ||||||||||||||||||    
T  24011095 ccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 12748749 - 12748689
Alignment:
Q  303 cggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatcc 363  Q
    ||||||||||||| |||  |||||||||||| || ||| || |||||||||||||||||||    
T  12748749 cggtgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 38919262 - 38919212
Alignment:
Q  312 acacgacatttatgattacactaaattatatcgttttctcaaattattatc 362  Q
    ||||||||  ||||||||||||||| |||| | ||||||||||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 37986825 - 37986772
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||| || |||||| |||| ||||||||||||| | ||||||||||    
T  37986825 tatgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgt 37986772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 8300212 - 8300264
Alignment:
Q  303 cggtgtccgacac-gacatttatgattacactaaattatatcgttttctcaaa 354  Q
    |||||||| |||| |||| |||||||||||||||||||| || ||||||||||    
T  8300212 cggtgtccaacaccgacacttatgattacactaaattatgtcattttctcaaa 8300264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 22085049 - 22084997
Alignment:
Q  323 atgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||||||||| || |||||| |||||||||| || ||| ||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattatacgtgtcagcgtgt 22084997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 2016 - 1948
Alignment:
Q  301 gtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcg 369  Q
    |||||||||||||||||||  ||||||||||||||| ||| || ||||| |||||||||||||| ||||    
T  2016 gtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcg 1948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 3144652 - 3144707
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    |||||||||||  |||||||||||||||||||||| |||||| |||||||||||||    
T  3144652 ccgacacgacacctatgattacactaaattatatcattttctgaaattattatccg 3144707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 20743278 - 20743344
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||| |||  |||||||||||| |||||| || |||||||||||||||||||| ||||||||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgt 20743344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 49659502 - 49659573
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatt-tatgattacactaaattatatcgttttctcaaattatt 359  Q
    |||||| |||| ||||||||||||||| | |   |||||||||||||||||||||| |||||||||||||||    
T  49659502 tgtcgggcacgtgtcggtgtccgacaccaaaacctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 24343566 - 24343500
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||||||||  ||| |||||||| |||||| |  |||||||||||||||||||| ||||||||||    
T  24343566 ccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgt 24343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 6274003 - 6273953
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattatt 359  Q
    ||||||||||   ||| |||||||||||||||||| |||||||||||||||    
T  6274003 ccgacacgacgactataattacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 16402195 - 16402273
Alignment:
Q  293 ggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggc 371  Q
    ||||||| ||| |||||||||||||||  ||| ||||||||  || || |  |||||||||||||||||||| ||||||    
T  16402195 ggacacgtgtcagtgtccgacacgacagctataattacactgtatcatgttattttctcaaattattatccgtgtcggc 16402273  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 39507099 - 39507173
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatcc 363  Q
    |||||||||||  || ||||||||||  |||  |||||||||||| ||||||||| |||||  ||||||||||||    
T  39507099 tgtcggacacgtatcagtgtccgacataacacctatgattacacttaattatatcattttcataaattattatcc 39507173  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 7012112 - 7012059
Alignment:
Q  322 tatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    |||||| ||||| |||||| || |||||||||||||||||| | ||||||||||    
T  7012112 tatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgt 7012059  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 8423713 - 8423769
Alignment:
Q  305 gtgtccgacac-gacatttatgattacactaaattatatcgttttctcaaattatta 360  Q
    ||||||||||| ||||||||| |||||||| |||||| |  ||||||||||||||||    
T  8423713 gtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 31243548 - 31243600
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattat 361  Q
    |||||| ||||  |||||||||||| |||||| || |||||||||||||||||    
T  31243548 ccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 32910593 - 32910549
Alignment:
Q  326 attacactaaattatatcgttttctcaaattattatccgcgtcgg 370  Q
    |||||||| |||||| || |||||||||||||||||||| |||||    
T  32910593 attacactgaattatgtcattttctcaaattattatccgtgtcgg 32910549  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 48415728 - 48415792
Alignment:
Q  312 acacgacatttatgattacactaaattatatc-gttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||| ||||||||||||||||||||||  |||| | ||||||||||||| ||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcggcgtgt 48415792  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 42004947 - 42005002
Alignment:
Q  309 ccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    ||||||| |||  ||||||||||||||||||| || ||||||||||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccg 42005002  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 6574055 - 6573987
Alignment:
Q  301 gtcggtgtccgacacgacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcgg 370  Q
    ||||||||| ||||| |||  |||||||||||||||||||||| || ||||||||||| ||||| |||||    
T  6574055 gtcggtgtc-gacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcgg 6573987  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 11634127 - 11634179
Alignment:
Q  312 acacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    ||||||||  |||||||||| |||||||| | |||||||||||||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatccg 11634179  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 23440051 - 23440008
Alignment:
Q  327 ttacactaaattatatcgttttctcaaattattatccgcgtcgg 370  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  23440051 ttacactaaattatatcattttctcaaattattatacgtgtcgg 23440008  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 375
Target Start/End: Original strand, 46348363 - 46348449
Alignment:
Q  289 tgtcggacacgagtcggtgtccgacac-gacatttatgattacactaaattatatcgttttctcaaattattatccgcgtcggcgtgt 375  Q
    ||||||||||| |||| |||||||||| |||| || | |||||||||||||||||  |||| ||||||||||| | | ||||||||||    
T  46348363 tgtcggacacgtgtcg-tgtccgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgt 46348449  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 6936402 - 6936455
Alignment:
Q  311 gacacgacatttatgattacactaaattatatcgttttctcaaattattatccg 364  Q
    |||||||||  |||||||||||| |||||| || |||||||| |||||||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccg 6936455  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 56974 - 56932
Alignment:
Q  316 gacatttatgattacactaaattatatcgttttctcaaattat 358  Q
    |||| ||||||||||||| ||||||||| ||||||||||||||    
T  56974 gacacttatgattacactgaattatatcattttctcaaattat 56932  T

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