View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8272_low_5 (Length: 387)

Name: NF8272_low_5
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8272_low_5
NF8272_low_5
[»] chr6 (8 HSPs)
chr6 (3-361)||(2360916-2361274)
chr6 (216-273)||(12622821-12622878)
chr6 (216-273)||(34388334-34388391)
chr6 (216-273)||(20427047-20427104)
chr6 (216-273)||(34389144-34389201)
chr6 (214-273)||(24319188-24319246)
chr6 (218-313)||(34484220-34484315)
chr6 (213-273)||(14629672-14629732)
[»] chr1 (5 HSPs)
chr1 (215-273)||(24691-24749)
chr1 (216-273)||(36976400-36976457)
chr1 (216-273)||(15724298-15724355)
chr1 (215-285)||(15857947-15858017)
chr1 (216-329)||(30095802-30095915)
[»] chr7 (3 HSPs)
chr7 (216-273)||(12866622-12866679)
chr7 (216-273)||(24823130-24823187)
chr7 (216-271)||(4239370-4239425)
[»] chr8 (3 HSPs)
chr8 (216-285)||(24570217-24570285)
chr8 (212-273)||(14141841-14141902)
chr8 (212-273)||(14145278-14145339)
[»] chr4 (5 HSPs)
chr4 (216-273)||(50394225-50394282)
chr4 (217-273)||(48747315-48747371)
chr4 (223-273)||(21556045-21556095)
chr4 (218-269)||(12879627-12879678)
chr4 (227-263)||(6766007-6766043)
[»] chr5 (4 HSPs)
chr5 (216-298)||(35371705-35371787)
chr5 (236-284)||(20858123-20858171)
chr5 (239-273)||(26267548-26267582)
chr5 (216-273)||(29518496-29518553)
[»] scaffold0330 (1 HSPs)
scaffold0330 (216-273)||(1879-1936)
[»] chr2 (1 HSPs)
chr2 (219-299)||(7706466-7706546)
[»] chr3 (1 HSPs)
chr3 (217-274)||(10950041-10950098)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 2361274 - 2360916
Alignment:
Q  3 aaaagctccgatggcctagtggggatggatagaagatttgagtttgtagcatgaaaacaattattatgcaaatgaaaactattattatcatggaaattta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2361274 aaaagctccgatggcctagtggggatggatagaagatttgagtttgtagcatgaaaacaattattatgcaaatgaaaactattattatcatggaaattta 2361175  T
Q  103 ttgtatgtgtaaatgtgaataatttaactgtttatttataatatatatttaaaacatatagagacaggcaagtcagaaacaagatatgcatgtatatcaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2361174 ttgtatgtgtaaatgtgaataatttaactgtttatttataatatatatttaaaacgtatagagacaggcaagtcagaaacaagatatgcatgtatatcaa 2361075  T
Q  203 attcaaactcccctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccactgaggttgtcgttttaa 302  Q
    || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  2361074 atacaaactccactgatgactaaatttgtcaagtgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctctactaaggttgtcgttttaa 2360975  T
Q  303 ctcggaaactagcgttatctattaaaacgacaaataaaatgctataaaatatacaaaag 361  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  2360974 ctcggaaactagcgttatttattaaaacaacaaataaaatgctataaaatatataaaag 2360916  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 12622821 - 12622878
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||| ||| || | |||||||||||||||||||||||| ||||||||    
T  12622821 tgatgactaaatttgacaagtgaaacaaaccgttttcaagtaataaagtggtaagtaa 12622878  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 34388334 - 34388391
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||| | ||| |||||| ||||||||||||||||||||||| |||||||    
T  34388334 tgatgactaaattcggcaagtgcacctaaccgttttcaagtaataaagtaataagtaa 34388391  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 20427104 - 20427047
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    |||| |||||||||||||| |||| |||||| ||||||| |||||||||| |||||||    
T  20427104 tgataactaaatttgtcaagtgcatcaaaccattttcaaataataaagtactaagtaa 20427047  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 34389144 - 34389201
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    |||||| |||||||| ||| ||||| |||||||||| ||||||| |||||||||||||    
T  34389144 tgatgattaaatttggcaagtgcacgaaaccgttttaaagtaattaagtagtaagtaa 34389201  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 24319188 - 24319246
Alignment:
Q  214 cctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    |||||||| |||||||| ||| ||||| ||||||||| |||||||||||| |||||||||    
T  24319188 cctgatgattaaatttggcaagtgcactaaaccgttt-caagtaataaagaagtaagtaa 24319246  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 34484315 - 34484220
Alignment:
Q  218 atgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccactgaggttgtcgttttaactcggaaacta 313  Q
    ||||||||||| | ||| || ||  |||||||||||||||||| |||||||||||| | | |||| || || |||||||||| |||| || |||||    
T  34484315 atgactaaattcggcaagtgtacttaaccgttttcaagtaatagagtagtaagtaaaatcgtctctacggaagttgtcgtttcaactaggcaacta 34484220  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 14629732 - 14629672
Alignment:
Q  213 ccctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||| || ||||| ||| |||| ||||| |||||||||| ||||||||||| ||||    
T  14629732 ccctgatgattacatttggcaagtgcatcaaactgttttcaagttataaagtagtaggtaa 14629672  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 24749 - 24691
Alignment:
Q  215 ctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||    
T  24749 ctgatgactaaatttgtcatatgcaccaaacaattttcaagttataaagtagtaagtaa 24691  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 36976400 - 36976457
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||    
T  36976400 tgatgactaaatttggcaagtgcatcaaacctttttcaagtaataaagtagtaagtaa 36976457  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 15724355 - 15724298
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||| ||| |||| |||||  ||||||||||||||||||||||||||    
T  15724355 tgatgactaaatttgacaagtgcatcaaactattttcaagtaataaagtagtaagtaa 15724298  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 15857947 - 15858017
Alignment:
Q  215 ctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccac 285  Q
    |||||||||||||||| ||| ||  ||||| |||||||| ||||||||||||||| ||| | |||||||||    
T  15857947 ctgatgactaaatttgacaagtgtgccaaatcgttttcaggtaataaagtagtaactaaaatcatctccac 15858017  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 30095802 - 30095915
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccactgaggttgtcgttttaactcggaaactagc 315  Q
    ||||||||||||||| ||| || ||||||| |||||||| ||||||| |  ||||||| | | ||||||| | |  |||| ||| ||||||| |||||||    
T  30095802 tgatgactaaatttgccaagtgaaccaaactgttttcaaataataaattgataagtaacatcgtctccacagggactgtcatttcaactcggcaactagc 30095901  T
Q  316 gttatctattaaaa 329  Q
    ||||  ||||||||    
T  30095902 gttacttattaaaa 30095915  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 12866622 - 12866679
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||    
T  12866622 tgatgactaaatttaacaagtgcaccaaaccgttttcacgtaataaagtagtaagtaa 12866679  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 24823130 - 24823187
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||| ||| || | |||||||||||||||||||||| ||||||||||    
T  24823130 tgatgactaaatttggcaagtgtatcaaaccgttttcaagtaataaaatagtaagtaa 24823187  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 4239425 - 4239370
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagt 271  Q
    |||||||||||||||| || |||||||| |||||||||||||||| | ||||||||    
T  4239425 tgatgactaaatttgtgaagtgcaccaacccgttttcaagtaatacaatagtaagt 4239370  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 24570285 - 24570217
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccac 285  Q
    ||||||||||||||| |||||||||||||| |  || ||||||||||||||||||||| | |||||||||    
T  24570285 tgatgactaaatttgacaaatgcaccaaactgcgtt-aagtaataaagtagtaagtaaaatcatctccac 24570217  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 14141902 - 14141841
Alignment:
Q  212 cccctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||| |||||| |||||| ||| | ||||||| ||||| ||||||||||||| ||||||||    
T  14141902 cccctaatgacttaatttggcaagtacaccaaatcgtttccaagtaataaagtggtaagtaa 14141841  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 14145339 - 14145278
Alignment:
Q  212 cccctgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||| |||||| |||||| ||| | ||||||| ||||| ||||||||||||| ||||||||    
T  14145339 cccctaatgacttaatttggcaagtacaccaaatcgtttccaagtaataaagtggtaagtaa 14145278  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 50394282 - 50394225
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||| ||||||||||    
T  50394282 tgatggctaaatttggcaggtgcaccaaaccgttttcaagtaataaattagtaagtaa 50394225  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 48747315 - 48747371
Alignment:
Q  217 gatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||| ||| ||||||||    
T  48747315 gatgactaaatttggcaagtgcaccaaacctttttcaagtaatatagtggtaagtaa 48747371  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 21556045 - 21556095
Alignment:
Q  223 taaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||  ||||||| ||||| |||||||||||||||||||||||||||    
T  21556045 taaatttggtaaatgcatcaaactgttttcaagtaataaagtagtaagtaa 21556095  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 12879627 - 12879678
Alignment:
Q  218 atgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaa 269  Q
    ||||||||||| | ||| | ||||| ||||||||||||||||||||||||||    
T  12879627 atgactaaattcggcaagtacaccagaccgttttcaagtaataaagtagtaa 12879678  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 6766043 - 6766007
Alignment:
Q  227 tttgtcaaatgcaccaaaccgttttcaagtaataaag 263  Q
    |||||||| |||||||||||||||||||| |||||||    
T  6766043 tttgtcaagtgcaccaaaccgttttcaagaaataaag 6766007  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 298
Target Start/End: Complemental strand, 35371787 - 35371705
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccactgaggttgtcgtt 298  Q
    ||||||||||||||| ||| || |||||||| ||| ||||||||||||| |||||||| | | ||||||| | | ||||||||    
T  35371787 tgatgactaaatttggcaactgaaccaaaccatttccaagtaataaagttgtaagtaaaatcgtctccacggggattgtcgtt 35371705  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 20858171 - 20858123
Alignment:
Q  236 tgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctcca 284  Q
    ||||| |||| ||||||||||||||||||||||||||| | ||||||||    
T  20858171 tgcactaaactgttttcaagtaataaagtagtaagtaaaatcatctcca 20858123  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 26267548 - 26267582
Alignment:
Q  239 accaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    |||||||||||||||| ||||||||||||||||||    
T  26267548 accaaaccgttttcaaataataaagtagtaagtaa 26267582  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 29518496 - 29518553
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||||||||||| ||| || ||||||  |||| || |||||||||||||||||||    
T  29518496 tgatgactaaatttggcaagtgtaccaaattgtttccatgtaataaagtagtaagtaa 29518553  T

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Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 1936 - 1879
Alignment:
Q  216 tgatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaa 273  Q
    ||||||| ||||| | ||| |||||| || ||||||||||||||||||||||||||||    
T  1936 tgatgacaaaattcggcaagtgcaccgaatcgttttcaagtaataaagtagtaagtaa 1879  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 7706466 - 7706546
Alignment:
Q  219 tgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaagagcatctccactgaggttgtcgttt 299  Q
    |||||||||||| ||| |||||||||| |||| |||||||||||||| || |||| | | ||||||| | | |||||||||    
T  7706466 tgactaaatttgacaagtgcaccaaactgtttccaagtaataaagtattatgtaaaatcgtctccacagggattgtcgttt 7706546  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 10950041 - 10950098
Alignment:
Q  217 gatgactaaatttgtcaaatgcaccaaaccgttttcaagtaataaagtagtaagtaag 274  Q
    ||||| || ||||| ||| ||||||||| ||||||||| ||||||||||| |||||||    
T  10950041 gatgattatatttggcaagtgcaccaaaacgttttcaactaataaagtagcaagtaag 10950098  T

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