View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_low_6 (Length: 385)
Name: NF8272_low_6
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 3416335 - 3415960
Alignment:
| Q |
1 |
tgatcttcaacataatttagcttatcaactctttctgactcaaaaagaggcacgatctagaatacttctacaatctctcatcaagaaacaaataatgaat |
100 |
Q |
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| T |
3416335 |
tgatcttcaacataatttagcttatcaactctttctgactcaaaaagaggcacgatctagaatacttctacaatctctcatcaagaaacaaataatgaat |
3416236 |
T |
|
| Q |
101 |
tttattagtatcacatattctctctccatccaacatcatatacactttggtttt---gagattacacccatgtatcagccatcacttttattataatttc |
197 |
Q |
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| T |
3416235 |
tttattagtatcacatattctctctccatccaacatcatatacactttggttttgaggagattacacccatgtatcagccatcacttttattataatttc |
3416136 |
T |
|
| Q |
198 |
atcaccaatcgttcatct---acaaccatgtaaaagcacatgtctagaattataaataccacacctagcatgactaggattatataacaaggattagctt |
294 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416135 |
atcaccaatcgttcatctacaacaaccatgtaaaagcacatgtctagaattctaaataccacacctagcatgactaggattatataacaaggattagctt |
3416036 |
T |
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| Q |
295 |
caagtaaagaggagcaaggaagctacctaggttttaaaattttagcaactaagaatttttgtttatgcataaaatt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416035 |
caagtaaagaggagcaaggaagctacctaggttttaaaattttagcaactaagaatttttgtttatgcataaaatt |
3415960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 46889120 - 46889168
Alignment:
| Q |
197 |
catcaccaatcgttcatctacaaccatgtaaaagcacatgtctagaatt |
245 |
Q |
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||||||||||| | ||||||||| ||||| ||| ||||||||||||||| |
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| T |
46889120 |
catcaccaatcctccatctacaagcatgtgaaaacacatgtctagaatt |
46889168 |
T |
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