View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_low_7 (Length: 376)
Name: NF8272_low_7
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 3548752 - 3548395
Alignment:
| Q |
1 |
aactaaacatatggggagaacaaagagaatgnnnnnnnnnnacctccatgattgaaccatccttggatttctgctgtgttggaaccatttcaacaacgta |
100 |
Q |
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| T |
3548752 |
aactaaacatatggggagaacaaagagaatgttttttttt-acctccatgattgaaccatccttggatttctgctgtgttggaaccatttcaacaacgta |
3548654 |
T |
|
| Q |
101 |
atcggtgaccgaaagaagccaatcaatttcttttctccatcttgctttcctttccggtggcattggctctaggcgcttttgttcaccgaaaacagcagct |
200 |
Q |
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| T |
3548653 |
atcggtgaccgaaagaagccaatcaatttcttttctccatcttgctttcctttccggtggcattggctctaggcgcttttgttcaccgaaaacagcagct |
3548554 |
T |
|
| Q |
201 |
gcattaattcaagaaactgacaatgaataattggaaacatttcctgaaaatggaaggaaaaagcaaaatgtttctccatcaaaattcagaagtatagaga |
300 |
Q |
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| T |
3548553 |
gcattaattcaagaaactgacaatgaataattggaaacatttcctgaaaatggaaggaaaaagcaaaatgtttctccatcaaaattcagaagtatagaga |
3548454 |
T |
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| Q |
301 |
gaatgctttattatcttagctcaaggagaaagaaaagaaaccataccagcaagatttgt |
359 |
Q |
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| T |
3548453 |
gaatgctttattatcttagctcaaggagaaagaaaagaaaccataccagcaagatttgt |
3548395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 43812533 - 43812668
Alignment:
| Q |
57 |
ccatccttggatttctgctgtgttggaaccatttcaacaacgtaatcggtgaccgaaagaagccaatcaatttcttttctccatcttgctttcctttccg |
156 |
Q |
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| T |
43812533 |
ccatccttagatttttgctgtgaaggaaccatttcaacaacataatctgtgactgatagaagcaaatcaatttcttttctccatcttgctttcctttctg |
43812632 |
T |
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| Q |
157 |
gtggcattggctctaggcgcttttgttcaccgaaaa |
192 |
Q |
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| T |
43812633 |
ctggcattggttctaggcgcttttgttcaccgaaaa |
43812668 |
T |
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