View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_low_8 (Length: 305)
Name: NF8272_low_8
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 6796209 - 6795924
Alignment:
| Q |
1 |
aaaagtcagaatcagttttttctaacaaaaaagttattagatccaatataaaagcatattggtcactcacttgttgaggagtaccaagaggagaaagaat |
100 |
Q |
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| T |
6796209 |
aaaagtcagaatcagttttttctaacaaaaa-gttattagatccaatataaaagcatattggtcactcacttgttgaggagtaccaagaggagaaagaat |
6796111 |
T |
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| Q |
101 |
tccataagtcacagtccatgtgtagaacttataatcatcttctgcttgcactaaagacacacttactaatgcaagaacaagacatagtagagatagcaca |
200 |
Q |
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| T |
6796110 |
tccataagtcacagtccatgtgtagaacttataatcatcttctgcttgcactaaagacacgcttactaatgcaagaacaagacatagtagagatagcaca |
6796011 |
T |
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| Q |
201 |
ctagtgcttctgcttcccattgttttcactgaaaaaatgaaaatagaaatacactattattagaatgctggtaacccaaaatgaaac |
287 |
Q |
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| T |
6796010 |
ctagtgcttctgcttcccattgttttcactgaaaaaatgaaaatagaaatacactattattagaatgctggtaaccaaaaatgaaac |
6795924 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 33847034 - 33847122
Alignment:
| Q |
75 |
tgaggagtaccaagaggagaaagaattccataagtcacagtccatgtgtagaacttataatcatcttctgcttgcactaaagacacact |
163 |
Q |
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| T |
33847034 |
tgaggagtaccaagtggagaaagagttccataagttacagtccatgtaaaatatttgtatccatcttctgcttgcactagagaaacact |
33847122 |
T |
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