View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_high_3 (Length: 399)
Name: NF8273_high_3
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 37663566 - 37663803
Alignment:
| Q |
20 |
tcactaacccaccccatccttttaaagaggaacagatgaatatcttgacaataaattagtagtatattatcataatttgtaatgaatacctttgggacaa |
119 |
Q |
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| T |
37663566 |
tcactaacccgccccatccttttaaagaggaacagatgaatatcttgacaataaattagtagtatatcatcataatttgtaatgaatacctttgggacaa |
37663665 |
T |
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| Q |
120 |
atcaaattgctaaaactcagtaatcactttccaagctaaatccttagaaatttgcaaccattatatattcaatactcttacatttcatgtcatgcgtgaa |
219 |
Q |
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| T |
37663666 |
atcaaattgctaaaactcagt-atcactttccaagctaaatccttagaaatttgcaaccattatatattcaatactcttacattttatgtcatgtgcgaa |
37663764 |
T |
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| Q |
220 |
tatcatttcatgtcacatgtttgggtgtatgcggggttg |
258 |
Q |
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| T |
37663765 |
tatcatttcatgttacatgtttgggtgtatgcggggttg |
37663803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 37663802 - 37663844
Alignment:
| Q |
340 |
tgagacgatatatgattataaatctcttttat-atgtgatttt |
381 |
Q |
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| T |
37663802 |
tgagacgatatatgattataaatctcttttataatgtgatttt |
37663844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 17651754 - 17651712
Alignment:
| Q |
300 |
aaagagcaaattaatttaagaaaggtggatttggcctccgtga |
342 |
Q |
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| T |
17651754 |
aaagagcaaattaatttaagaaaggtggatttggcctccgtga |
17651712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 21689687 - 21689645
Alignment:
| Q |
300 |
aaagagcaaattaatttaagaaaggtggatttggcctccgtga |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21689687 |
aaagagcaaattaatttaagaaaggtggatttggcctccgtga |
21689645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 18328381 - 18328419
Alignment:
| Q |
304 |
agcaaattaatttaagaaaggtggatttggcctccgtga |
342 |
Q |
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| T |
18328381 |
agcaaattaatttaagaaaggtggatttggcctccgtga |
18328419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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