View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8273_high_8 (Length: 235)
Name: NF8273_high_8
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_high_8 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 34451577 - 34451799
Alignment:
| Q |
13 |
gttaccttactctgttttcaaattcaaattgtaaatcatattccagtattgatgtactttgaaatttcatcaatgaattgaatcatttatattcatgtta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34451577 |
gttaccttactctgttttcaaattcaaattgtaaatcatattccagtattgatgtactttgaaatttcatcaatgaattgaatcatttatattcatgtta |
34451676 |
T |
|
| Q |
113 |
tcagccttctaattcgtttagtcgcaaattgatcccatgaaactgctatttttcttttgtacgagagcaaataagtgaagcactaaggtaaccatgtgta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34451677 |
tcagccttctaattcgtttagtcgcaaattgatcccatgaaactgctatttttcttctgtacgagagcaaataagtgaagcactaagttaaccatgtgta |
34451776 |
T |
|
| Q |
213 |
ctactgtggaaaaggataacaat |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34451777 |
ctactgtggaaaaggataacaat |
34451799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 34441841 - 34441931
Alignment:
| Q |
61 |
ttgatgtactttgaaatttcatcaatgaattgaatcatttatattcatgttatcagccttctaattcgtttagtcgcaaattgatcccatga |
152 |
Q |
| |
|
||||||||||||||| | | ||||||||| ||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||| |||||| |
|
|
| T |
34441841 |
ttgatgtactttgaa-tgtaatcaatgaactgaatcatttatattcatggtatcaaccttctaattcttttaattgcaaattgataccatga |
34441931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 34467988 - 34468042
Alignment:
| Q |
84 |
aatgaattgaatcatttatattcatgttatcagccttctaattcgtttagtcgca |
138 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||| |||||||||||||||| ||||| |
|
|
| T |
34467988 |
aatgaattgaatcatttacattaatggtatcaaccttctaattcgtttaatcgca |
34468042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University