View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_1 (Length: 644)
Name: NF8273_low_1
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 128 - 370
Target Start/End: Complemental strand, 56295960 - 56295719
Alignment:
| Q |
128 |
atgtacacgtagacccacttaggaactcattttaaaaattcaccatttttaatattctaagtatatctctgcattccttaaaccaaata-tattttgtat |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||| |
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| T |
56295960 |
atgtacacgtagacccacttaggaactcattttaaaaattcaccattttttatattctaagtatatctctgcattccttaaa--atatagtattttgtat |
56295863 |
T |
|
| Q |
227 |
caaaccatcaaattactactaataaatgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaattagtaacaggaacatgaaga |
326 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
56295862 |
caaaccatcaaaccactactaataaatgaatttgggataaactatgaaattcaatgaataaaattctgcattcttttaattagtgacaggaacatgaaga |
56295763 |
T |
|
| Q |
327 |
aagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56295762 |
aagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
56295719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 399 - 595
Target Start/End: Complemental strand, 56295690 - 56295494
Alignment:
| Q |
399 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgtttcaannn |
498 |
Q |
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| T |
56295690 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgtttcagttt |
56295591 |
T |
|
| Q |
499 |
nnnnnnnacggcttctatgattcataattaatttactgttaaaagatgaacaatacgagaacaattcatattttccaaacttctctttggtgtgatt |
595 |
Q |
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| T |
56295590 |
tttttttacggcttctatgattcataattaatttactgttaaaagatgaacaatatgagaacaattcatattttccaaacttctctttggtgtgatt |
56295494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 56296087 - 56296011
Alignment:
| Q |
1 |
taattatagctaaagtcattggtagaaaacatatacattactgttgaaatataatgatgtgttggttttgagagtgt |
77 |
Q |
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| T |
56296087 |
taattatagctaaagtcattggtagaaaaaatatacattactgttgaaatataatgatgtgttggttttgagagtgt |
56296011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 36229088 - 36228935
Alignment:
| Q |
217 |
tattttgtatcaaaccatcaaattactactaataaatgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaattagtaacagg |
316 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
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| T |
36229088 |
tattttgtatcaaaccatcaaactactactaataaatgaatttgggataaactatgaaattcaatgaataaaattatgcattcttttaattagtgacagg |
36228989 |
T |
|
| Q |
317 |
aacatgaagaaagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36228988 |
aacatgaagaaagtgcagcagaaatgaaatccatgaagatttaaaaaagattag |
36228935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 399 - 492
Target Start/End: Complemental strand, 36228906 - 36228813
Alignment:
| Q |
399 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgttt |
492 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36228906 |
ataaactgaaagtggattaccgaatcatcattacagctcttttacaaggtttgatttaatgataacccatatcccaaatttggatttgatgttt |
36228813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 32318909 - 32318820
Alignment:
| Q |
217 |
tattttgtatcaaaccatcaaattactactaataaa-tgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaa |
305 |
Q |
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|||||||||||||| ||| ||| ||||||||| ||| |||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
32318909 |
tattttgtatcaaagcataaaactactactaaaaaaatgaatttgagataaactatgaaatttgatgaataaaattctgcattcttttaa |
32318820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 610
Target Start/End: Complemental strand, 36228783 - 36228731
Alignment:
| Q |
558 |
aacaattcatattttccaaacttctctttggtgtgattcataagatgtgattg |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36228783 |
aacaattcatattttccaaacttctctttggtgtgattcataaggtgtgattg |
36228731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 585
Target Start/End: Complemental strand, 32318390 - 32318317
Alignment:
| Q |
515 |
atgattcataattaatt---tactgttaaaagatgaacaatacgagaacaattcatattttccaaacttctctt |
585 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| ||| ||||| |||||||||||||| || ||||||| |
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| T |
32318390 |
atgattcatacttaattagttacagttaaaagatgaaccatatgagaataattcatattttcccaatttctctt |
32318317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 217 - 370
Target Start/End: Original strand, 17917393 - 17917546
Alignment:
| Q |
217 |
tattttgtatcaaaccatcaaattactactaataaatgaatttgggataaactatgaaattcaattaataaaattctgcattcttttaattagtaacagg |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
17917393 |
tattttgtatcaaaccatcaaactactactaataaatgaatttgggataaactatgaaattcaatgaataaaattctgcattcttttaattagtgacagg |
17917492 |
T |
|
| Q |
317 |
aacatgaagaaagtgcagcagaaatgaaatccatgaagatttaaaaaggattag |
370 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
17917493 |
aacatgtagaaagtgcagcataaatgaaatccatgaagatttaaaaaagattag |
17917546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 17917575 - 17917633
Alignment:
| Q |
399 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaa |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17917575 |
ataaactgaaagtggattaccgaatcatcatcacagctcttttacaaggtttgatttaa |
17917633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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