View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_10 (Length: 349)
Name: NF8273_low_10
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 16897922 - 16897608
Alignment:
| Q |
17 |
cactatcggggatcatgttgtggtctgcgcgagttatttaaaaacatgatagtgataatgaatctgagaatttgttctacacatttttggtcttgttctg |
116 |
Q |
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| T |
16897922 |
cactattggggatcatgttgtggtctgcgcgagttatttaaaaacatgatagtgataatgaatctgagaatttgttctacacatttttggtcttgttctg |
16897823 |
T |
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| Q |
117 |
gannnnnnnnn--aaggggtttggattatgagtttctcaagtgtcaatgtgatttctatgtatgtaggggggtgaagcatttttcaggggtgtgttggag |
214 |
Q |
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| T |
16897822 |
gattcttttttttaaggggtttggattatgagtttctcaagtgttaatgtgatttctatgtatgtaggggggtgaagcatttttcaggggtgtgttggag |
16897723 |
T |
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| Q |
215 |
agtatgcagtcggtgtacttgaacagaaatcctacagcaaaggcaatattggaccttgttcactctgtcgagaacaactccttatgctatgatcatcttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16897722 |
agtatgcagtcggtgtacttgaacagaaatcctacagcaaaggcaatattggaccttgttcactctgtcgagaacaactccttatgctatgatcatcttg |
16897623 |
T |
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| Q |
315 |
cattcaggacatttg |
329 |
Q |
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||||||||||||||| |
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| T |
16897622 |
cattcaggacatttg |
16897608 |
T |
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