View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_11 (Length: 346)
Name: NF8273_low_11
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 24716160 - 24715831
Alignment:
| Q |
1 |
tgaagaagaagttgaaggattctatggagagttttaatcgtttgcgtgaagttattacaacggagtatagagaaactgttcaacggcgnnnnnnnactgt |
100 |
Q |
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| T |
24716160 |
tgaagaagaagttgaaggattctatggagagttttaatcgtttgcgtgaagttattacaacggagtatagagagactgttcaacggcgtttttttactgt |
24716061 |
T |
|
| Q |
101 |
tactggagagaatcctgatgataagactcttgatctattgatatctactggtaatttttatatctctttgattttgttgtttaaaactaatcatgtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716060 |
tactggagagaatcctgatgataagactcttgatctattgatatctactggtaatttttatatctctttgattttgttgtttaaaactaatcatgtttta |
24715961 |
T |
|
| Q |
201 |
tgataatttgatgttgaaattaacttttatataaataaattctagtgtgttttactaggtgatcatcatgagttgaattcttcatcaattttggattgga |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24715960 |
tgataatttgatgttgaaattaatttttatataaataaattctagtgtgttttactaggtgatcatcatgagttgaattcttcatcaattttggattgga |
24715861 |
T |
|
| Q |
301 |
aaataatttgacttaattgaattggtttat |
330 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
24715860 |
aaataatttgacttaattgaattggtttat |
24715831 |
T |
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