View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_12 (Length: 344)
Name: NF8273_low_12
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 20755633 - 20755507
Alignment:
| Q |
177 |
caattaagaaatattcttgaagaaattagtctttgtagttgtttgaggatactctaaaaaatattgctagaaggagaaatatgcaatggtattatgtcaa |
276 |
Q |
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| T |
20755633 |
caattaagaaatattcttgaagaaattagtctatgtagttgtttgaggatactctaaaaaatattgctagaaggagaaatgtgcaatggtattatgtcaa |
20755534 |
T |
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| Q |
277 |
ttaatttattagcaattttattcttct |
303 |
Q |
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| T |
20755533 |
ttaatttattagcaattttattcttct |
20755507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 20755757 - 20755634
Alignment:
| Q |
19 |
ccactcgcacttttgtggatagactttataatggaccttcaaaatacacatctcctattaatatggaacaactactagctcttt-aattgttaaatagta |
117 |
Q |
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| T |
20755757 |
ccacacgcacttttgtggataaactttataatggaccttcaaaatacacatctcctattaatatggaacaactactagctctttgaattgttaaatagta |
20755658 |
T |
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| Q |
118 |
ctaaattagtcccttcaattcctt |
141 |
Q |
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| T |
20755657 |
ttaaactagtcccttcaattcctt |
20755634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 20751241 - 20751173
Alignment:
| Q |
30 |
tttgtggatagactttataatggaccttcaaaatacacatctcctattaatatggaacaactactagct |
98 |
Q |
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| T |
20751241 |
tttgttgatagactttacaatggaccttcaaaatacacatttcctattaatatggaacaactagtagct |
20751173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 20799563 - 20799511
Alignment:
| Q |
31 |
ttgtggatagactttataatggaccttcaaaatacacatctcctattaatatg |
83 |
Q |
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| T |
20799563 |
ttgtcgatagactttataatggaccgtcacaatacacatctcctgttaatatg |
20799511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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