View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_16 (Length: 255)
Name: NF8273_low_16
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_16 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 34451976 - 34452119
Alignment:
| Q |
112 |
atgaggcatgatatatttgaaacttttgaaatatattgtaacaggaggtcataatgctatgcaatgttacaagctcaagaggaatctgtgtaagtcacca |
211 |
Q |
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| T |
34451976 |
atgaggcatgatatatttgaaacttttgaaatatattgtaacaggaggtcataatgctatgcaatgttacaagctcaagaggaatctgtgtaagtcacca |
34452075 |
T |
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| Q |
212 |
caatccactgcaaatgttgtccaaatcagtactcctccttcgga |
255 |
Q |
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| T |
34452076 |
caatccactgcgaatgttgtccaaatcagtactcctccttcgga |
34452119 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34451854 - 34451893
Alignment:
| Q |
1 |
cttggactaatttaaaataagatgagagtaatattagtag |
40 |
Q |
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| T |
34451854 |
cttgtactaatttaaaataagatgagagtaatattagtag |
34451893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 34470529 - 34470577
Alignment:
| Q |
156 |
gaggtcataatgctatgcaatgttacaagctcaagaggaatctgtgtaa |
204 |
Q |
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| T |
34470529 |
gaggtcacaatgatatgcaatgttacaagctcaaaaagaatctatgtaa |
34470577 |
T |
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