View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8273_low_19 (Length: 211)

Name: NF8273_low_19
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8273_low_19
NF8273_low_19
[»] chr4 (2 HSPs)
chr4 (42-196)||(35166482-35166639)
chr4 (14-50)||(28713289-28713325)
[»] chr1 (1 HSPs)
chr1 (131-196)||(50846209-50846274)
[»] chr5 (2 HSPs)
chr5 (13-49)||(15862612-15862648)
chr5 (68-120)||(2308247-2308299)
[»] chr3 (2 HSPs)
chr3 (74-118)||(17650994-17651038)
chr3 (14-50)||(17620183-17620219)
[»] chr8 (1 HSPs)
chr8 (75-120)||(27812568-27812613)
[»] chr6 (1 HSPs)
chr6 (75-120)||(14019425-14019470)
[»] chr7 (2 HSPs)
chr7 (68-120)||(6085167-6085219)
chr7 (68-120)||(27116849-27116901)
[»] chr2 (2 HSPs)
chr2 (131-163)||(24600611-24600643)
chr2 (131-163)||(24613471-24613503)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 35166639 - 35166482
Alignment:
Q  42 ctgaataactccctgtctacgttgcacgggtgcggg------atacaacatttctcaaaaaataaagatacgggtacgttaggatnnnnnnnnnnttaat 135  Q
    ||||||||||||||||||||||||||||||||||||      ||||| |||||||||||||| ||||||||||||||||||||||            ||     
T  35166639 ctgaataactccctgtctacgttgcacgggtgcgggcacgggatacatcatttctcaaaaaacaaagatacgggtacgttaggataaaaaaaaa---aaa 35166543  T
Q  136 ttaaaataacattgcatgaggaaattattttgaaaatatagtataatcaagtgagaagtga 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35166542 ttaaaataacattgcatgaggaaattattttgaaaatatagtataatcaagtgagaagtga 35166482  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 28713325 - 28713289
Alignment:
Q  14 gcagagagggtccggtaacctgaacgaactgaataac 50  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28713325 gcagagagggtctggtaacctgaacgaactgaataac 28713289  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 50846274 - 50846209
Alignment:
Q  131 ttaatttaaaataacattgcatgaggaaattattttgaaaatatagtataatcaagtgagaagtga 196  Q
    ||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  50846274 ttaattttaaataacatagcatgaggaaattatattgcaaatatagtataatcaagtgggaagtga 50846209  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 15862648 - 15862612
Alignment:
Q  13 agcagagagggtccggtaacctgaacgaactgaataa 49  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15862648 agcagagagggtctggtaacctgaacgaactgaataa 15862612  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 2308299 - 2308247
Alignment:
Q  68 cgggtgcgggatacaacatttctcaaaaaataaagatacgggtacgttaggat 120  Q
    ||||| ||||||||  ||||| |||||||| |||| |||||||||||||||||    
T  2308299 cgggtacgggatacggcatttgtcaaaaaacaaaggtacgggtacgttaggat 2308247  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 17651038 - 17650994
Alignment:
Q  74 cgggatacaacatttctcaaaaaataaagatacgggtacgttagg 118  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||    
T  17651038 cgggatacgacatttctcaaaaaacaaaggtacgggtacgttagg 17650994  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 17620183 - 17620219
Alignment:
Q  14 gcagagagggtccggtaacctgaacgaactgaataac 50  Q
    ||||||||| || ||||||||||||||||||||||||    
T  17620183 gcagagaggatctggtaacctgaacgaactgaataac 17620219  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 27812613 - 27812568
Alignment:
Q  75 gggatacaacatttctcaaaaaataaagatacgggtacgttaggat 120  Q
    |||||||  |||||||||||||| |||| |||||||||||||||||    
T  27812613 gggatacggcatttctcaaaaaacaaaggtacgggtacgttaggat 27812568  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 14019425 - 14019470
Alignment:
Q  75 gggatacaacatttctcaaaaaataaagatacgggtacgttaggat 120  Q
    ||||||| ||||||||||||||| |||| ||| |||||||||||||    
T  14019425 gggatacgacatttctcaaaaaacaaaggtactggtacgttaggat 14019470  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 6085219 - 6085167
Alignment:
Q  68 cgggtgcgggatacaacatttctcaaaaaataaagatacgggtacgttaggat 120  Q
    ||||| ||||||||  |||||||||||||| |||| ||||||||| |||||||    
T  6085219 cgggtacgggatacggcatttctcaaaaaacaaaggtacgggtaccttaggat 6085167  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 27116849 - 27116901
Alignment:
Q  68 cgggtgcgggatacaacatttctcaaaaaataaagatacgggtacgttaggat 120  Q
    ||||| ||||||||  |||||||||||||| |||| |||||||||| ||||||    
T  27116849 cgggtacgggatacgtcatttctcaaaaaacaaaggtacgggtacggtaggat 27116901  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 24600643 - 24600611
Alignment:
Q  131 ttaatttaaaataacattgcatgaggaaattat 163  Q
    ||||||||||||||||| |||||||||||||||    
T  24600643 ttaatttaaaataacatagcatgaggaaattat 24600611  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 24613471 - 24613503
Alignment:
Q  131 ttaatttaaaataacattgcatgaggaaattat 163  Q
    ||||||||||||||||| |||||||||||||||    
T  24613471 ttaatttaaaataacatagcatgaggaaattat 24613503  T

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