View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_2 (Length: 520)
Name: NF8273_low_2
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 49 - 507
Target Start/End: Complemental strand, 28399740 - 28399276
Alignment:
| Q |
49 |
gttgatcgtgatatcaagctgtccagcctcatcgcaaagctttccac---gatggattctaatttttgcctcaagtatcaacttcctggtcaagatctcg |
145 |
Q |
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| T |
28399740 |
gttgatcgtgatatcaagttttccaacctcgtcacaaagctttctactatgatgtattctaaattttgcttcaagtatcaacttcctggtcaagatctcg |
28399641 |
T |
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| Q |
146 |
atactttgatcccggtcttaaatgaggaagatttggatgatatgatgtgcaagtatgattatatgtatcgtatttcaccaaatcctgccaagctgaggct |
245 |
Q |
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| T |
28399640 |
atactttgatcccagtcttaaaccaggaagatttggatgatatgatgttcaagtatgattatatgtatagtatttcaccaaatcctgccaagttgaggct |
28399541 |
T |
|
| Q |
246 |
cttcctcttcccagttcctactacaacggctgaagatttccctccacctcgacgacgtctgcatcaaaaggttacatttacaaaagatgagatgaaggaa |
345 |
Q |
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| T |
28399540 |
cttcctcttgcctgttcctactccatcagctgaagatttacctccacctccacgacgtccgcatcagaaggttacctttacaaaagatgagatgaaggaa |
28399441 |
T |
|
| Q |
346 |
tttcaagaactaaatattgtgaatgatggattcgaaaagattttaaaatatgttatgaagtgtttttgaatttaattactaatatgtatagattccgatt |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28399440 |
tttcaagaactaaatattgtgaatgatggattcgaaaagattttaaaatatgttatgaagtgtttttgaatttaattactaatatgtatagattccgatt |
28399341 |
T |
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| Q |
446 |
gatt---aatatattggtatttttatgatggatttgtctttgattattctttcacttatgtatct |
507 |
Q |
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|||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
28399340 |
gattaataatatattggtatttttatgatagatttgtctctgattattcttgcacttatgtatct |
28399276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 2443389 - 2443521
Alignment:
| Q |
152 |
tgatcccggtcttaaatgaggaagatttggatgatatgatgtgcaagtatgattatatgtatcgtatttcaccaaatcctgccaagctgaggctcttcct |
251 |
Q |
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||||||| ||||||||||| |||||| | ||||||||||||| |||||||||| | ||| ||| |||| |||| ||| ||| | ||||| ||||||| |
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| T |
2443389 |
tgatcccagtcttaaatgaagaagatatcgatgatatgatgttcaagtatgatcgtgtgtctcgcattttgccaacacctcccatgttgagggtcttcct |
2443488 |
T |
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| Q |
252 |
cttcccagttcctactacaacggctgaagattt |
284 |
Q |
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| T |
2443489 |
cttccctgttcctactccgtcggctgaagattt |
2443521 |
T |
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