View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_3 (Length: 436)
Name: NF8273_low_3
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 39350940 - 39350524
Alignment:
| Q |
1 |
acttactaagagaacactcatccaaagtccgtggaacctcctttggaacaagagcttcttctgccttaactggttggagaatcttcgaataattttgacc |
100 |
Q |
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| T |
39350940 |
acttactaagagaacactcatccaaagtccgtggaacctcctttggaacaagagcttcttctgccttaactggttggagaatcttcgaataattttgacc |
39350841 |
T |
|
| Q |
101 |
taataatatatcaacttatgtaaccaaggtttgaaatgaaatctatatatttgacctaataatatatcaaattatgttattgaggattgaaatgaaatgg |
200 |
Q |
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| T |
39350840 |
taacaatatatcaacttatgtaaacaaggtttgaaatgaaatctatatatttgacctaataatatatcaaattatgttattgaggattgaaatgaaatgg |
39350741 |
T |
|
| Q |
201 |
aatgcatagttttgatgaaagagtaatgcaatcatcatgttacaaattaaagtgaagtagagaaaaaacacttactagaagagtaattctcaaaatcctt |
300 |
Q |
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| T |
39350740 |
aatgcatagttttgatgaaagagtaatgcaatcatcatgttacaaattaaagtgaagtagagaaaaaacacttactagaagagtaattctcaaaatcctt |
39350641 |
T |
|
| Q |
301 |
tggaacctcgttaggaagaggagctttttgaaccataactggttggtgattctcattagaattttgacctaataatccattaacgtaagtaactgaggat |
400 |
Q |
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| T |
39350640 |
tggaacctcgttaggaagaggagctttttgaaccataactggttggtgattctcattagaattttgacctaataatccattaacgtaagtaactgaggat |
39350541 |
T |
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| Q |
401 |
tgaaattaaatgcaaac |
417 |
Q |
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| T |
39350540 |
tgaaattaaatgcaaac |
39350524 |
T |
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