View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_4 (Length: 431)
Name: NF8273_low_4
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 38323242 - 38322818
Alignment:
| Q |
13 |
gagattgcatataaaatgtcctcacaaccagaccaataaattgtattaatgaagatatattacaagttaaaaacaagtccaaatcacaaacattcaaatc |
112 |
Q |
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| T |
38323242 |
gagattgcatataaaatgtcctcacaaccagaccaataaattgtattaatgaggatatattacaagttaaaaacaagtccaaatcacaaacattcaaatc |
38323143 |
T |
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| Q |
113 |
catc--------cacaatccataacctaacaaccatatatagttataatttcaaaccataaaagccnnnnnnnnncatcataaaccaaagttaagtaaat |
204 |
Q |
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| T |
38323142 |
catcaatgagtccacaatccataacctaacaaccatatatagttataatttcaaaccataaaagccaaaaaaaaacatcataaaccaaagttaagtaaat |
38323043 |
T |
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| Q |
205 |
acaagcaaatcaatcatcatcaccattgtcgtcaacttcaaaatcaatatcattagacgctttgccaccccatacataattttttatcatatatctctat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
38323042 |
acaagcaaatcaatcatcatcaccattgtcgtcaacttcaaaatcaatatcattagacgctttgccaccccatacataatgttttatcatat--ctctat |
38322945 |
T |
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| Q |
305 |
ccaactcactaattgaaatctgagtagcatgttttaatgtttcaaacaactattaaaatcatatgatgcatgtgtgatagataggatatcagggacagag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38322944 |
ccaactcactaattgaaatctgagtagcatgttttaatgtttcaaacaactattaaaatcatatgatgcatgtgagatagataggatatcagggacagag |
38322845 |
T |
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| Q |
405 |
agacatgaagtattgatgctaagaagc |
431 |
Q |
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| T |
38322844 |
agacatgaagtattgatgctaagaagc |
38322818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 38301533 - 38301487
Alignment:
| Q |
184 |
ataaaccaaagttaagtaaatacaagcaaatcaatcatcatcaccat |
230 |
Q |
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| T |
38301533 |
ataaaccaaagttaaatagatacaagcaaatcaatcatcatcaccat |
38301487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 38326982 - 38326932
Alignment:
| Q |
180 |
catcataaaccaaagttaagtaaatacaagcaaatcaatcatcatcaccat |
230 |
Q |
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| T |
38326982 |
catcataaactaaagttaaataaatacaagcaaatcaatcatcaccaccat |
38326932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 38322274 - 38322225
Alignment:
| Q |
180 |
catcataaaccaaagttaagtaaatacaagcaaatcaatcatcatcacca |
229 |
Q |
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| T |
38322274 |
catcataaacagaagttaaatagatacaagcaaatcaaccatcatcacca |
38322225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 38849143 - 38849225
Alignment:
| Q |
184 |
ataaaccaaagttaagtaaatacaagcaaatcaatcatcatcaccattgtcgtcaacttcaaaatcaatatcattagacgctt |
266 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||| |||| | |||||||| ||| |||||||| |||| |
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| T |
38849143 |
ataaaccaaagttaaataaatacaagcaaatcaatcatcatcgacatcatcgttatcttcaaaaccaaagtcattagaagctt |
38849225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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