View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_5 (Length: 419)
Name: NF8273_low_5
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 28321236 - 28320838
Alignment:
| Q |
1 |
gccaaagacggttcactagacaagaattggtcctctaaacgaactaaaggtgaaatttgataaatgtatcataatgttgcacnnnnnnnnn---aaagta |
97 |
Q |
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| T |
28321236 |
gccaaagacggttcactagacaagaattggtcctctaaacgaactaaag-tgaaatttgataaatgtatcataatgttgcactttttttttttaaaagta |
28321138 |
T |
|
| Q |
98 |
aaacagtaatgttgcacttatatagtgtcatatgctaattacaatcaattttaactaaccaccgagtttggtaacgcaagcttgtgacataagtagggtt |
197 |
Q |
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|||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28321137 |
aaacagcaatgttgcactcatacaatgtcatatgctaattacaatcaattttaactaaccaccgagtttggtaacgcaagcttgtgacataagtagggtt |
28321038 |
T |
|
| Q |
198 |
gtagaggcattaagatgttgagaggtctttgatgtgtgccaaaaagaa---atcaattttaactaactatgtgtatgaaacaa----nnnnnnnnnnnag |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
28321037 |
gtagaggcattaagatgttgagaggtctttgatgtgtgccaaaaaaaaaatatcaattttaactaactatgtgtatgaaacaaatttttttttttttgag |
28320938 |
T |
|
| Q |
291 |
ggtaagtatatgaaacaattgttaaccgatttgaattattctcaacaaataacacttagatcacgcagtcattattcatctaccacacttttgtatctgt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
28320937 |
ggtaagtatatgaaacaattgttaaccgatttgaattattctcaacaaataacactttgatcacgcacttattattcatctaccacacttttgtatctgt |
28320838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 26303937 - 26303981
Alignment:
| Q |
198 |
gtagaggcattaagatgttgagaggtctttgatgtgtgccaaaaa |
242 |
Q |
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| T |
26303937 |
gtaggggcattaagatgttgggaggtctttgatgtgtgcaaaaaa |
26303981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 13619140 - 13619184
Alignment:
| Q |
198 |
gtagaggcattaagatgttgagaggtctttgatgtgtgccaaaaa |
242 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
13619140 |
gtaggggcattaagatgttgggaggtctttgatgtgtgcaaaaaa |
13619184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 7639063 - 7639027
Alignment:
| Q |
206 |
attaagatgttgagaggtctttgatgtgtgccaaaaa |
242 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
7639063 |
attaagatgttggaaggtctttgatgtgtgccaaaaa |
7639027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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