View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8273_low_6 (Length: 417)

Name: NF8273_low_6
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8273_low_6
NF8273_low_6
[»] chr5 (5 HSPs)
chr5 (23-159)||(10868664-10868817)
chr5 (216-295)||(30654067-30654146)
chr5 (23-96)||(10885648-10885721)
chr5 (319-393)||(30654160-30654233)
chr5 (28-69)||(31607214-31607255)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 10868664 - 10868817
Alignment:
Q  23 tggacactttcttactgttaagtttcaattttcaatggtcacattacatggtgccatgaaagagcagt-----------------gatgtagggatgata 105  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||                 | ||||||| || ||    
T  10868664 tggacactttcttactgttaagtttcaattttctatgctcacattacatggtgccgtgaaagagcggtaatgtaatatatggcagggtgtagggctggta 10868763  T
Q  106 tatatgtagtataatccagcttcaattttgtgagttatgtgattagaactataa 159  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  10868764 tatatgcaatataatccagcttcagttttgtgagttatgtgattagaactataa 10868817  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 30654067 - 30654146
Alignment:
Q  216 gatggcttcttgggagtctatgctgagattttcgatacaattatgtctagtttttctgcatctgctttggaatctcgact 295  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  | ||||||||||    
T  30654067 gatggcttgttgggagtctatgctgagattttcgatacaattctgtctagtttttctgcctctgctgcgcaatctcgact 30654146  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 10885721 - 10885648
Alignment:
Q  23 tggacactttcttactgttaagtttcaattttcaatggtcacattacatggtgccatgaaagagcagtgatgta 96  Q
    |||||||||||||||| |||||||||||||||  ||| ||  ||||||||||||||||||| |||||| |||||    
T  10885721 tggacactttcttactcttaagtttcaattttgtatgctcgaattacatggtgccatgaaaaagcagtaatgta 10885648  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 30654160 - 30654233
Alignment:
Q  319 atagcttttagcatgttgcaaactttttgttagttgcctccagatgtgattagatgcctactgttttggagtttg 393  Q
    ||||||||| ||||||||||  |||||  ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  30654160 atagcttttggcatgttgcactcttttc-ttagttgcctccaaatgtgattagatgcctacagttttggggtttg 30654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 31607214 - 31607255
Alignment:
Q  28 actttcttactgttaagtttcaattttcaatggtcacattac 69  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  31607214 actttcttactgttaagtttcaattttctatggtcacattac 31607255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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