View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_7 (Length: 408)
Name: NF8273_low_7
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 2 - 281
Target Start/End: Complemental strand, 2602618 - 2602339
Alignment:
| Q |
2 |
gaaatcatgataaatagaatcatcattgtatctaaatgaatagactaaatcataacaaacacaacattcaaacttcattgaaatgaaacaataacctaat |
101 |
Q |
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| T |
2602618 |
gaaatcgtgataaatagaatcatcattgtatctaaatgaatagactaaatcataacaaacacaacattcaaacttcattgaaatgaaacaataatctaat |
2602519 |
T |
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| Q |
102 |
aagattattaccccaaaagaaggcctgtagtcagctggagctccacctttgtctcctccaaattcaccagcaggtcctctagggcctccacggtatccat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602518 |
aagattattaccccaaaagaaggcctgtagtcagctggagctccacctttgtctcctccaaattcaccagcaggtcctctagggcctccacggtatccat |
2602419 |
T |
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| Q |
202 |
cacggtcaccaccaaatctcctttctccatcaaatcttggtgggcccctgtccaaacacagtccattcaatcaaacaact |
281 |
Q |
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| T |
2602418 |
cacggtcaccaccaaatctcctttctccatcaaatcttggtgggcccctgtccaaacacagtccattcaatcaaacaact |
2602339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 2602301 - 2602216
Alignment:
| Q |
307 |
ctcaaagcaacaacgtcgaattaattacctagggcgatcaccaggaggaccaccaaagggccttccagctggcttagcctgcttct |
392 |
Q |
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| T |
2602301 |
ctcaaagcaacaacgtcgaattaattacctagggcgatcaccaggaggaccaccaaagggccttccagctggcttagcctgcttct |
2602216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 2602648 - 2602613
Alignment:
| Q |
17 |
agaatcatcattgtatctaaatgaatagactaaatc |
52 |
Q |
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| T |
2602648 |
agaatcatcattgtatctaaatgaatagacgaaatc |
2602613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 41341279 - 41341411
Alignment:
| Q |
109 |
ttaccccaaaagaaggcctgtagtcagctggagctccacctttgtctcctccaaattcaccagcaggtcctctagggcctccacggtatccatcacggtc |
208 |
Q |
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|||||||||| || || ||||| ||||| ||||| || || ||||||||||||||||||||| | ||| ||||||||||| ||||||||||| |
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| T |
41341279 |
ttaccccaaatgagggtctgtaatcagcaggagcacctcccttgtctcctccaaattcacca---------cgaggacctccacggtacccatcacggtc |
41341369 |
T |
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| Q |
209 |
accaccaaatctcctttctccatcaaatcttggtgggcccct |
250 |
Q |
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| T |
41341370 |
accaccaaatcttctctccccttcaaatctgggtggacccct |
41341411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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