View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8273_low_9 (Length: 355)
Name: NF8273_low_9
Description: NF8273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8273_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 33810416 - 33810616
Alignment:
| Q |
1 |
gattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaattttcatcatactatgtc |
100 |
Q |
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| T |
33810416 |
gattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaatttttatcatactatgtc |
33810515 |
T |
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| Q |
101 |
aagaaacacataaaatttcattcaccatcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgct |
200 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33810516 |
aagaaaaacataaaatttcattcaccatcaatccacaaattgacacattgaaagaaaagccaactaacctcatcggcagtgataatcgccttgatatgct |
33810615 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
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| |
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|
| T |
33810616 |
g |
33810616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 33869885 - 33870085
Alignment:
| Q |
1 |
gattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaattttcatcatactatgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33869885 |
gattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaatttttatcatactatgtc |
33869984 |
T |
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| Q |
101 |
aagaaacacataaaatttcattcaccatcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgct |
200 |
Q |
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| T |
33869985 |
aagaaaaacataaaatttcattcaccatcaatccacaaattgacacattgaaagaaaagccaactaacctcatcggcagtgataatcgccttgatatgct |
33870084 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
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| |
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|
| T |
33870085 |
g |
33870085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 33810687 - 33810743
Alignment:
| Q |
282 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtag |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810687 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtag |
33810743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 33870156 - 33870212
Alignment:
| Q |
282 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtag |
338 |
Q |
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| T |
33870156 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtag |
33870212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 24409179 - 24409104
Alignment:
| Q |
126 |
catcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgctg |
201 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||| |
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| T |
24409179 |
catcaatcaacatattcacacattgaaagaaaaggtaactaacctcatcagcagtgataatcaccttgatatgctg |
24409104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 24409015 - 24408965
Alignment:
| Q |
284 |
atatgatatacctccaagttaagaacaatagccttctcacgaccgagaata |
334 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24409015 |
atatgatatacctccaagttaagaataatagccttctcacgaccgagaata |
24408965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 24409828 - 24409980
Alignment:
| Q |
48 |
aaatacaaagtgaggttatacagcaatacagtgaattttcatcatactatgtcaagaaacacataaaatttcattcac---catcaatcaacaaattgac |
144 |
Q |
| |
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|||| ||||||||||||| || |||||||||||||| ||| || | ||||||||||| || | ||||| |||||| |||||||||||| ||| || |
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| T |
24409828 |
aaatgcaaagtgaggttaagcatcaatacagtgaattctcaccaaa--atgtcaagaaaaac--acaattttattcaccatcatcaatcaacatattcac |
24409923 |
T |
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| Q |
145 |
acattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgctg |
201 |
Q |
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||||||||||||||| |||||||||| || || ||||||||| |||||||||||| |
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| T |
24409924 |
acattgaaagaaaaggtaactaacctcatcagcggtgataatcatcttgatatgctg |
24409980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 24410070 - 24410120
Alignment:
| Q |
284 |
atatgatatacctccaagttaagaacaatagccttctcacgaccgagaata |
334 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24410070 |
atatgatatacctccaaattaagaataatagccttctcacgaccgagaata |
24410120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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