View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8274_high_10 (Length: 234)
Name: NF8274_high_10
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 42169901 - 42169689
Alignment:
| Q |
1 |
acggacctgtttgcagactgtgttataaagatctttcggggaaactccaccctgcacaagctggttaaacacatcatcacaagattttgaaatttgtgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169901 |
acggacctgtttgcagactgtgttataaagatctttcggggaaactccaccctgcacaagctggttaaacacatcatcacaagattttgaaatttgtgcc |
42169802 |
T |
|
| Q |
101 |
atattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggccctgtttggataaacaacttaattagcctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169801 |
atattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggccctgtttggataaacaacttaattagcctca |
42169702 |
T |
|
| Q |
201 |
tagcataaggact |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
42169701 |
tagcataaggact |
42169689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
| Q |
165 |
taggccctgtttggataaacaacttaatta |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5620290 |
taggccctgtttggataaacaacttaatta |
5620261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
| Q |
165 |
taggccctgtttggataaacaacttaatt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
14955597 |
taggccctgtttggataaacaacttaatt |
14955625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
| Q |
166 |
aggccctgtttggataaacaacttaatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
30090132 |
aggccctgtttggataaacaacttaatta |
30090160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
| Q |
166 |
aggccctgtttggataaacaacttaatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
37308260 |
aggccctgtttggataaacaacttaatta |
37308232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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