View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8274_high_11 (Length: 232)

Name: NF8274_high_11
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8274_high_11
NF8274_high_11
[»] chr6 (3 HSPs)
chr6 (14-214)||(7927117-7927317)
chr6 (116-207)||(7929129-7929220)
chr6 (167-207)||(7273051-7273091)
[»] chr8 (3 HSPs)
chr8 (167-207)||(40444705-40444745)
chr8 (172-207)||(18080944-18080979)
chr8 (167-207)||(31220344-31220384)
[»] chr7 (3 HSPs)
chr7 (166-210)||(25770094-25770138)
chr7 (166-207)||(8249704-8249745)
chr7 (166-207)||(25775668-25775709)
[»] chr3 (6 HSPs)
chr3 (172-203)||(38869250-38869281)
chr3 (166-209)||(50676920-50676963)
chr3 (165-202)||(11661224-11661261)
chr3 (166-207)||(50381713-50381754)
chr3 (167-207)||(166788-166828)
chr3 (167-207)||(35126290-35126329)
[»] chr4 (7 HSPs)
chr4 (166-204)||(52366206-52366244)
chr4 (167-212)||(32006501-32006545)
chr4 (167-212)||(34595952-34595996)
chr4 (166-207)||(38690665-38690706)
chr4 (166-207)||(39254599-39254640)
chr4 (166-207)||(49635431-49635472)
chr4 (167-207)||(20096291-20096330)
[»] chr2 (4 HSPs)
chr2 (171-209)||(31594419-31594457)
chr2 (166-204)||(42678382-42678420)
chr2 (158-210)||(14944154-14944205)
chr2 (165-205)||(30856574-30856614)
[»] chr1 (6 HSPs)
chr1 (169-207)||(34940471-34940509)
chr1 (166-207)||(4126898-4126939)
chr1 (166-207)||(12973333-12973374)
chr1 (167-207)||(19396212-19396251)
chr1 (167-207)||(24631840-24631879)
chr1 (167-207)||(27160495-27160535)
[»] chr5 (3 HSPs)
chr5 (167-207)||(9628117-9628157)
chr5 (167-199)||(20191442-20191474)
chr5 (167-207)||(31991816-31991856)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 7927317 - 7927117
Alignment:
Q  14 gatgaaggaaatcaatctcaagtgtaaaatagaagatctaattgagcatcaaaaaatggaagtaagttaagttctcactattgagaagcttagtcaccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7927317 gatgaaggaaatcaatctcaagtgtaaaatagaagatctaatttagcatcaaaaaatggaagtaagttatgttctcactattgagaagcttagtcaccaa 7927218  T
Q  114 gtaaaggtacaaatccaaaaaagacaaaacaacatactcaacacaagtctatatgagtttaactcacttggtaagggataatgcataatatatgtaaaga 213  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  7927217 gtaaaggtacaaatccaaaaaatacaaaacaacaaactcaacacaagtctacatgagcttaactcacttggtaagggataatgtataatatatgcaaaga 7927118  T
Q  214 t 214  Q
    |    
T  7927117 t 7927117  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 7929220 - 7929129
Alignment:
Q  116 aaaggtacaaatccaaaaaagacaaaacaacatactcaacacaagtctatatgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  7929220 aaaggtacaaatccaaaaaagacaaaacaacaaactcaacacaagtttatatgagtttaactcacttgataagggataatacataatatatg 7929129  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 7273051 - 7273091
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||| |||||||| |||||||||||||||| ||||||||||    
T  7273051 tgagcttaactcagttggtaagggataatgaataatatatg 7273091  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 40444705 - 40444745
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  40444705 tgagcttagctcacttggtaagggataatgcataatatatg 40444745  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 18080944 - 18080979
Alignment:
Q  172 ttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18080944 ttaactcacttggtaagggataatgcatattatatg 18080979  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 31220344 - 31220384
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  31220344 tgagcttagctcacttggtaagggataatgcattatatatg 31220384  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 25770138 - 25770094
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatgtaa 210  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||    
T  25770138 atgaatttaactcacttggtaaaggataatgtataatatatgtaa 25770094  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 8249704 - 8249745
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||| ||| |||||||||||| |||||||||||||||||||    
T  8249704 atgagcttagctcacttggtaaaggataatgcataatatatg 8249745  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 25775709 - 25775668
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||| |||||||||||| |||||||| ||||||||||    
T  25775709 atgagtttagctcacttggtaaaggataatgtataatatatg 25775668  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 203
Target Start/End: Complemental strand, 38869281 - 38869250
Alignment:
Q  172 ttaactcacttggtaagggataatgcataata 203  Q
    ||||||||||||||||||||||||||||||||    
T  38869281 ttaactcacttggtaagggataatgcataata 38869250  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 50676963 - 50676920
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatgta 209  Q
    |||||||||||||||||||||||||| ||| |||| ||||||||    
T  50676963 atgagtttaactcacttggtaagggacaatacatattatatgta 50676920  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 11661261 - 11661224
Alignment:
Q  165 tatgagtttaactcacttggtaagggataatgcataat 202  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  11661261 tatgagtttagctcacttgataagggataatgcataat 11661224  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 50381713 - 50381754
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||| |||||||| |||||||||||||||||| ||||||||    
T  50381713 atgagcttaactcatttggtaagggataatgcacaatatatg 50381754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 166788 - 166828
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||| ||| ||||||||||||||||||||||||||| ||||    
T  166788 tgagcttagctcacttggtaagggataatgcataatttatg 166828  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 35126329 - 35126290
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  35126329 tgagtttaactcagttggta-gggataatgcataatatatg 35126290  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 52366206 - 52366244
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatat 204  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  52366206 atgagtttaactcatttggtaagggataatgcacaatat 52366244  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 32006501 - 32006545
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatgtaaag 212  Q
    |||||||| |||| |||||| |||||||||||||||||||||||||    
T  32006501 tgagtttagctcagttggta-gggataatgcataatatatgtaaag 32006545  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 34595996 - 34595952
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatgtaaag 212  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||    
T  34595996 tgagtttaactcagttggtaagg-acaatgcataatatatgtaaag 34595952  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 38690665 - 38690706
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||    
T  38690665 atgagcttagctcacttggtaagggataatgcatattatatg 38690706  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 39254640 - 39254599
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||||||||||| |||||| ||||| |||||||||||    
T  39254640 atgagtttaactcacttagtaaggaataatacataatatatg 39254599  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 49635431 - 49635472
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||| |||| |||||||||||||||||| ||||||||    
T  49635431 atgagtttagctcatttggtaagggataatgcacaatatatg 49635472  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 20096330 - 20096291
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  20096330 tgagtttaactcagttggta-gggataatgcataatatatg 20096291  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 31594457 - 31594419
Alignment:
Q  171 tttaactcacttggtaagggataatgcataatatatgta 209  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  31594457 tttaactcatttggtaaggaataatgcataatatatgta 31594419  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 42678420 - 42678382
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatat 204  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  42678420 atgagtttaacttacttggtaagggataatgcacaatat 42678382  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 14944154 - 14944205
Alignment:
Q  158 aagtctatatgagtttaactcacttggtaagggataatgcataatatatgtaa 210  Q
    |||||||| |||| ||||||||||| |||| ||| ||||||||||||||||||    
T  14944154 aagtctatgtgagcttaactcacttagtaa-ggacaatgcataatatatgtaa 14944205  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 30856614 - 30856574
Alignment:
Q  165 tatgagtttaactcacttggtaagggataatgcataatata 205  Q
    |||||| |||||||| ||| |||||||||||||||||||||    
T  30856614 tatgagattaactcaattgataagggataatgcataatata 30856574  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 34940509 - 34940471
Alignment:
Q  169 agtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  34940509 agtttagctcacttggtaagggataatgcatattatatg 34940471  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 4126898 - 4126939
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||| |||| |||||||||||||||||| ||||||||    
T  4126898 atgagtttagctcatttggtaagggataatgcacaatatatg 4126939  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 12973374 - 12973333
Alignment:
Q  166 atgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||| |||| |||||||||||||||||| ||||||||    
T  12973374 atgagtttagctcatttggtaagggataatgcacaatatatg 12973333  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 19396251 - 19396212
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  19396251 tgagtttaactcagttggta-gggataatgcataatatatg 19396212  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 24631840 - 24631879
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  24631840 tgagtttaactcagttggtaa-ggataatgcataatatatg 24631879  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 27160495 - 27160535
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||||||| |||| || ||||||||||||||||||||||||    
T  27160495 tgagtttagctcatttagtaagggataatgcataatatatg 27160535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 9628117 - 9628157
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||| |||||||| |||||||| ||||||||||||||||||    
T  9628117 tgagcttaactcatttggtaagagataatgcataatatatg 9628157  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 20191442 - 20191474
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcat 199  Q
    |||| ||||||||||||||||||||||||||||    
T  20191442 tgagcttaactcacttggtaagggataatgcat 20191474  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 31991856 - 31991816
Alignment:
Q  167 tgagtttaactcacttggtaagggataatgcataatatatg 207  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  31991856 tgagcttagctcacttggtaagggataatgcattatatatg 31991816  T

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