View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8274_high_2 (Length: 536)
Name: NF8274_high_2
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 5292789 - 5293278
Alignment:
| Q |
1 |
attgtataatacttagttttcttgttactcgacaacattaaagcgtctgcttacttatcagagaatattagtctacgaaataatcaagaagtgatcatga |
100 |
Q |
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| T |
5292789 |
attgtacaatacttagttttcttgttactcgacaacattaaagcgtctgcttacttatcagataatattagtctacgaaataatcaagaagtgatcatga |
5292888 |
T |
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| Q |
101 |
tagttgtaacatacataaatcaattggtgcaaattaaaaaagcatgaatctgttacataatatagctggaagaagatacaatgaaagttacctattgtgt |
200 |
Q |
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| T |
5292889 |
tagttgtaacatacataaatcaattggtgcaaattaaaaaagcatgaatctgttacataatatagctggaagaagatacaatgaaagttacctattgtgt |
5292988 |
T |
|
| Q |
201 |
tatcaaagtaagccatttttggagcttgaatttgaatagtttttgttccttacatcagcaggacagactctgagaagtgattatttccaagagttgtgac |
300 |
Q |
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| T |
5292989 |
tatcaaagtaagccatttttggagcttgaatttgaatagtttttgttccttacatcagcaggacagactctgagaagtgattatttccaagagttgtgac |
5293088 |
T |
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| Q |
301 |
cattattctcctgctgtttgttacgtgtttataatagtaatttgttatgagtttataccgagagtgtaaataagttttatacccacatctaatcatatgg |
400 |
Q |
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| T |
5293089 |
cattattctcctgctgtttgttacgtgtttataatagtaatttgttatgagtttataccgagagtgtaaataagttttatacccacatctaatcatatat |
5293188 |
T |
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| Q |
401 |
agnnnnnnnnnnnnncactacttaaatcatgagatattatgatatatggtcacacacaaatattttggatttgagcacaaccacaaattat |
491 |
Q |
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| T |
5293189 |
a-tatatatatatatcactccttaaatcatgagatattatgatatatggtcacacacaaatattttggatttgagcacaaccacaaattat |
5293278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 14952189 - 14952247
Alignment:
| Q |
184 |
aaagttacctattgtgttatcaaagtaagccatttttggagcttgaatttgaatagttt |
242 |
Q |
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|||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||| |
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| T |
14952189 |
aaagttacctattgtgttgttaaagtaagtcatttttggagcttgaatttgaatggttt |
14952247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 15123471 - 15123439
Alignment:
| Q |
205 |
aaagtaagccatttttggagcttgaatttgaat |
237 |
Q |
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| T |
15123471 |
aaagttagccatttttggagcttgaatttgaat |
15123439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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