View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8274_high_6 (Length: 287)
Name: NF8274_high_6
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 11905793 - 11906051
Alignment:
| Q |
20 |
gtaagtttaccatattacattcataacctatgtggcacgcccaaccatgcatacacagataacaagtttaaatcttatgtgataatcaactaaaatttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11905793 |
gtaagtttaccatattacattcataacatatgtggcacgcc-acccatgcatacacagataacacgtttaaatcttatgtgataatcaactaaaatttgt |
11905891 |
T |
|
| Q |
120 |
atttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11905892 |
atttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttaaataaaag |
11905991 |
T |
|
| Q |
220 |
tctgaatgcatcatctttgagctacaatattcgttattcagatgagattgagttcatttc |
279 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11905992 |
tctgaacgcatcatctttgagctacaatattcgttattcagatgagattgagttcatttc |
11906051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 11892223 - 11892321
Alignment:
| Q |
59 |
cccaaccatgcatacacagataacaagtttaaatcttatgtgataatcaactaaaatttgtatttgttttcaggttctagctttcaccaaggaataaag |
157 |
Q |
| |
|
|||| |||| || ||||| || ||| |||||||| |||||| |||||||| |||| | |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11892223 |
cccacccatacacacacatatcacatgtttaaattttatgtactaatcaacaaaaactcttatttgttttcaggttctagttttcatcaaggaataaag |
11892321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 261
Target Start/End: Complemental strand, 52818174 - 52818032
Alignment:
| Q |
119 |
tatttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaa |
218 |
Q |
| |
|
||||| ||| |||||| ||| ||||| ||||||||||| || ||||| | ||| ||||||| ||||| || |||| | | ||| |||||||||||||| |
|
|
| T |
52818174 |
tatttctttccaggttttagttttcatcaaggaataaatgcaacctccattgggaacaaagtgcaacatttaccttcctgtcgaagttctttgaataaaa |
52818075 |
T |
|
| Q |
219 |
gtctgaatgcatcatctttgagctacaatattcgttattcaga |
261 |
Q |
| |
|
||||||| || |||||| | ||| |||||||| || ||||||| |
|
|
| T |
52818074 |
gtctgaaagcctcatctctaagcaacaatatttgtgattcaga |
52818032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 11883086 - 11883209
Alignment:
| Q |
127 |
ttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaagtctgaat |
226 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||| |||||||| |||||| |||||||||| | ||||||| | | ||||| || |||||| ||| | || |
|
|
| T |
11883086 |
ttcaggttttagttttcatctaggaataaaggcaagctccatttggagtaaagtgaaacttctagcttcgtgtccgaattcgttaaataaatgtcgggat |
11883185 |
T |
|
| Q |
227 |
gcatcatctttgagctacaatatt |
250 |
Q |
| |
|
| ||| ||||||||||| |||||| |
|
|
| T |
11883186 |
gtatcgtctttgagctataatatt |
11883209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University