View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8274_high_7 (Length: 277)
Name: NF8274_high_7
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 33815395 - 33815653
Alignment:
| Q |
17 |
acagtgtttatcaatgggattgcaacagaaattcaagcagggccactagacatcaaaacagtgtttggagaagatgtgatgttagttcattcctctggtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815395 |
acagtgtttatcaatgggattgcaacagaaattcaagcagggccactagacatcaaaacagtgtttggagaagatgtgatgttagttcattcctctggtg |
33815494 |
T |
|
| Q |
117 |
tgccagttcccacaaatgaacatggcatcttgattcagagcttgcaccatggtgaaagctactttctggtacttgccacataccatcatacatcttcaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815495 |
tgccagttcccacaaatgaacatggcatcttgattcagagcttgcaccatggtgaaagctactttctggtacttgccacataccatcatacatcttcaaa |
33815594 |
T |
|
| Q |
217 |
tcaattgtttctattctaaatattgtgttgtcacatcttaatcattgttcttcattttc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33815595 |
tcaattgtttctattctaaatattgtgttgtcacatcttaatcattgttctttattttc |
33815653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 9377074 - 9376952
Alignment:
| Q |
65 |
gacatcaaaacagtgtttggagaagatgtgatgttagttcattcctctggtgtgccagttcccacaaatgaacatggcatcttgattcagagcttgcacc |
164 |
Q |
| |
|
||||| |||||| ||||||| |||||||| || || |||||||||||||| || ||||||| || ||||| ||| ||||||| |||| |||||| | |
|
|
| T |
9377074 |
gacatgaaaacaatgtttggtgaagatgtaatattggttcattcctctggagtctcagttccaaccaatgagtttggtttcttgatgcagaacttgcagc |
9376975 |
T |
|
| Q |
165 |
atggtgaaagctactttctggta |
187 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
9376974 |
atggtgaaagctactatctggta |
9376952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University