View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8274_high_8 (Length: 250)
Name: NF8274_high_8
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39119787 - 39119547
Alignment:
| Q |
1 |
ccccaatcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatggtcacattcttaattacnnnnnnnnnactatcatcgtttggtcaaata |
100 |
Q |
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| T |
39119787 |
ccccaatcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatggtcacattcttaattactttttttttactatcatcgtttggtcaa-ta |
39119689 |
T |
|
| Q |
101 |
atgtttcttattattcaagaaagaggaaagacaattcaattaaaaatccaacataacagttaaccaccagaaacgtaaattttttaaacctttcaactct |
200 |
Q |
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| T |
39119688 |
atgtttcttattattcaagaaagaggaaagacaattcaattaaaaatccaacataacagttaaccaccagaaacgtaaattttttaaacctttaaactct |
39119589 |
T |
|
| Q |
201 |
aacagaacttgactcctcaacatcttgcacccaataacacca |
242 |
Q |
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| T |
39119588 |
aacagaacttgactcctcaacatcttgcacccaataacacca |
39119547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 38612789 - 38613008
Alignment:
| Q |
6 |
atcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatggtcacattcttaattacnnnnnnnnnactatcatcgtttggtcaaataatgtt |
105 |
Q |
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| T |
38612789 |
atcatttcatctcagcttcaaagtctttatgtaatgaagactcaattgtcacattcttaattac-ttttttttactatcatcgtttggtcaaataatgtt |
38612887 |
T |
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| Q |
106 |
tcttattattcaagaaagaggaaagacaattcaattaaaaatccaacataacag---ttaaccaccagaaacgtaaattttttaaacc-tttcaactcta |
201 |
Q |
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| T |
38612888 |
tcttgttcgacaa-------gaaagacaattcaattaaaaatccaacaaaaccgttattatccatcaaaaacttaaaaaatttaaacctttttaactcta |
38612980 |
T |
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| Q |
202 |
acagaacttgactcctcaacatcttgca |
229 |
Q |
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| T |
38612981 |
acagaacttgacacttcaacatcttgca |
38613008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 39117526 - 39117301
Alignment:
| Q |
7 |
tcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatggtcacattcttaattac-nnnnnnnnnactatcatcgtttggtcaaataatgtt |
105 |
Q |
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|||||||||||||||||||| |||||||| ||| ||| |||||| ||||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
39117526 |
tcatttcatctcagcttcaaagtctttctttaataaagactcaattgtcacattcttaattacttttctttttactatcattgtttggtcaaatattgtt |
39117427 |
T |
|
| Q |
106 |
tcttattattcaagaaagaggaaagacaattcaattaaaaatccaacataacag---ttaaccaccagaaacgtaaattttttaaacctttcaactctaa |
202 |
Q |
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| T |
39117426 |
tcttgttctacaagaaaga--aaattcaattaaa--aaaaatccaacataacagttattatccatcagaaacttaaaaaatttaaatcttttaactctaa |
39117331 |
T |
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| Q |
203 |
cagaacttgactcctcaacatcttgcaccc |
232 |
Q |
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||||||||||| | | |||||||||||||| |
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| T |
39117330 |
cagaacttgacacttgaacatcttgcaccc |
39117301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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