View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8274_low_10 (Length: 240)
Name: NF8274_low_10
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 3284572 - 3284788
Alignment:
| Q |
17 |
aagacctccaatctatgtaccatgctcgaccaacctttcttctatattctcaattccttcgggttcacacttcctacgaagtaactcagtctctcattgt |
116 |
Q |
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| T |
3284572 |
aagacctccaatctatgtaccatgctcgaccaacctttcttctatattctcaattccttcgggttcacacttcctaagaagtaactcaatctctcattgt |
3284671 |
T |
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| Q |
117 |
gtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattattttagcctcgttgtttttgttgttggcttcacagagtacaggag |
216 |
Q |
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| T |
3284672 |
gtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattattttagcctcgttgtttttgttgttggcttcacagagtacaggag |
3284771 |
T |
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| Q |
217 |
ctccaagtttcttctca |
233 |
Q |
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| T |
3284772 |
ctccaagtttcttctca |
3284788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 32752727 - 32752622
Alignment:
| Q |
114 |
tgtgtatacacccatttcttttcttccacgttttctatatacaaagaataatcaattatttta-gcctcgttgtttttgttgttggcttcacagagtaca |
212 |
Q |
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| T |
32752727 |
tgtgtatacaaccatttctttt-ttccacgctttctatctacaaataacactcgatcattttatgcctacttgcttttgttgttggtttcgcagagtaca |
32752629 |
T |
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| Q |
213 |
ggagctc |
219 |
Q |
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| T |
32752628 |
ggagctc |
32752622 |
T |
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