View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8274_low_3 (Length: 486)
Name: NF8274_low_3
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 24562398 - 24562871
Alignment:
| Q |
1 |
ataagaaatgacaccgaccatacaaagcgcagccctacacgtcttaataactacccaaggttgctctttgctaggcaactctttagatactgattaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24562398 |
ataagaaatgacaccgaccatacaaagcgcagccctacacgtcttaataactacccaaggttgctctttgctgggcaactctttagatactgattaactt |
24562497 |
T |
|
| Q |
101 |
gatacacataattcccatgcacattctcaatgggcttcacaaatctcctatgagtacactgcagtggaaaatgcctcgtgtggaggacagtgttgttttc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24562498 |
gatacacgtaattcccatgcacattctcaatgggcttcacaaatctcctatgagtacactgcagtggaaaatgcctcgtgtggaggacagtgttgttttc |
24562597 |
T |
|
| Q |
201 |
ttcctgatgagcagcaaacttgatagcatgaccttcgaccaacctaagggtaaagcaagagatggcccagtcacctccgatcttgcagaataacttcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24562598 |
ttcctgatgagcagcaaacttgatagcatgaccttcgaccaacctaagggtaaagcaacagatggcccagtcacctccgatcttgcagaataacttcttg |
24562697 |
T |
|
| Q |
301 |
cccacaatcacaaactgcaaatcacaattccaagcacaacccttgtagtcaacaatagtcagctaacactatttcttcggcaatgcgcgctgacagaagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24562698 |
cccacaatcacaaactgcaaatcacaattccaagcacaacccttgtagtcaacaatagtcagctaacactatttcttcggcaatgcgcgctgacagaagc |
24562797 |
T |
|
| Q |
401 |
catgccaaggcaccctctgatttgcagatac-aaacnnnnnnnttgaacagttaaaattaagaacatcatattt |
473 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24562798 |
catgccaaggcaccatccgatttgcagatacaaaaaaataaaattgaacagttaaaattaagaacatcatattt |
24562871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University