View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8274_low_4 (Length: 461)
Name: NF8274_low_4
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 48754478 - 48754210
Alignment:
| Q |
1 |
gcaatgaaaatctggattaagtttggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagc |
100 |
Q |
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| T |
48754478 |
gcaatgtaaatctggattaagtttggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagc |
48754379 |
T |
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| Q |
101 |
aaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgttacaatcatcatatgt |
200 |
Q |
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| T |
48754378 |
aaggatatcaattgcagtcgtgttgtaat----------------------tcaagatcgggtcacaataatcaatgtcaatgtcacaatcatcatatgt |
48754301 |
T |
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| Q |
201 |
aattaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaaccttaacc |
291 |
Q |
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| T |
48754300 |
agttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagccttatcataaatatgaactgtcaaaacttaacc |
48754210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 49053051 - 49052947
Alignment:
| Q |
92 |
tgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgttacaatc |
191 |
Q |
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| T |
49053051 |
tgctaaagcaaggatttcaattgcagtcgcgttgtaattaaattcacgc-aaaagagcggcca--atagggtcacaataatcaatgtcaatgtcacaatc |
49052955 |
T |
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| Q |
192 |
atcatatg |
199 |
Q |
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| T |
49052954 |
attatatg |
49052947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 48754098 - 48754054
Alignment:
| Q |
403 |
gttcatcctatgctaatacccttggcacattgacattgttgtttt |
447 |
Q |
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| T |
48754098 |
gttcatcctatgctaatacccttggcacattgccattgttgtttt |
48754054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 35914421 - 35914347
Alignment:
| Q |
209 |
caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaa |
282 |
Q |
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| T |
35914421 |
caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaa |
35914347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 35914736 - 35914688
Alignment:
| Q |
23 |
ttggccaaattaagtaacattgattcacaactacgcaatcatagatcca |
71 |
Q |
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| T |
35914736 |
ttggccaaactaaagaacattgattcacaactaagcaatcaaagatcca |
35914688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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