View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8274_low_6 (Length: 317)
Name: NF8274_low_6
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 36140574 - 36140297
Alignment:
| Q |
1 |
tattacgaagtggacagcttaagaccctaagagtttacttgtttcaagatatgcgtatatattttggaaaatatgagattgggaatatagtgctcccata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36140574 |
tattacgaagtggacagcttaagaccctaagagtttacttgtttcaaaatatgcttatatattttggaaaatatgagattgggaatatagtgctcccgta |
36140475 |
T |
|
| Q |
101 |
tttgatccaaggtttaaaaagtttttataatttaatggattatgaggaacattttttgttcatattttctctcctta---cccattgtgcaggtgggaat |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
36140474 |
tttgatccaaggtttaaaaagtttttgtaatttaatggattatgaggaacattttttgttcatattttctctccttaattcccattgtgtaggtgggaat |
36140375 |
T |
|
| Q |
198 |
tttatgcgccaaggagaataaaaatcattttgaaatgtaaaccacccttcaccatttccagttaaacgagagagagag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36140374 |
tttatgcgccaaggagaataaaaatcattttgaaatgtaaaccacccttcaccatttccagttaaacgagagagagag |
36140297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 30821199 - 30820946
Alignment:
| Q |
18 |
cttaagaccctaagagtttacttgtttcaagatatgcgtatatattttggaaaatatgagattgggaatata--gt---gctcccatatttgatccaagg |
112 |
Q |
| |
|
||||||| | |||| || ||||| ||||||||||||| ||||||||| || | | |||||| ||||||| || || | |||||||||| || |||| |
|
|
| T |
30821199 |
cttaagatcttaagtgtgtacttctttcaagatatgcctatatatttcgggataaatgagactgggaatgtaacgtaacggtcccatattttatttaagg |
30821100 |
T |
|
| Q |
113 |
tttaaaaagtttttataatttaatggattatgaggaacatttttt-gttcatattttctctccttacccattgtgcagg-tgggaattttatgcgccaag |
210 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||||||| |||||| |||||||||||| || |||||| ||| ||||||| ||||| |||||| |
|
|
| T |
30821099 |
tttaaaaaaactttgcaatttgagggattatgaggaacttttttttgttcatattttcattct-----cattgtaaagggtgggaatcttatgtgccaag |
30821005 |
T |
|
| Q |
211 |
gagaataaaaatcattttgaaatgtaaaccacccttcaccatttccagttaaacgagag |
269 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
30821004 |
gagaatcaaaatcattttgaaatgtaaaccacccttcactgtttccagttaaactagag |
30820946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University