View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8274_low_7 (Length: 287)
Name: NF8274_low_7
Description: NF8274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8274_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 11905793 - 11906051
Alignment:
| Q |
20 |
gtaagtttaccatattacattcataacctatgtggcacgcccaaccatgcatacacagataacaagtttaaatcttatgtgataatcaactaaaatttgt |
119 |
Q |
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| T |
11905793 |
gtaagtttaccatattacattcataacatatgtggcacgcc-acccatgcatacacagataacacgtttaaatcttatgtgataatcaactaaaatttgt |
11905891 |
T |
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| Q |
120 |
atttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaag |
219 |
Q |
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| T |
11905892 |
atttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttaaataaaag |
11905991 |
T |
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| Q |
220 |
tctgaatgcatcatctttgagctacaatattcgttattcagatgagattgagttcatttc |
279 |
Q |
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| T |
11905992 |
tctgaacgcatcatctttgagctacaatattcgttattcagatgagattgagttcatttc |
11906051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 11892223 - 11892321
Alignment:
| Q |
59 |
cccaaccatgcatacacagataacaagtttaaatcttatgtgataatcaactaaaatttgtatttgttttcaggttctagctttcaccaaggaataaag |
157 |
Q |
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| T |
11892223 |
cccacccatacacacacatatcacatgtttaaattttatgtactaatcaacaaaaactcttatttgttttcaggttctagttttcatcaaggaataaag |
11892321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 261
Target Start/End: Complemental strand, 52818174 - 52818032
Alignment:
| Q |
119 |
tatttgttttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaa |
218 |
Q |
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| T |
52818174 |
tatttctttccaggttttagttttcatcaaggaataaatgcaacctccattgggaacaaagtgcaacatttaccttcctgtcgaagttctttgaataaaa |
52818075 |
T |
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| Q |
219 |
gtctgaatgcatcatctttgagctacaatattcgttattcaga |
261 |
Q |
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| T |
52818074 |
gtctgaaagcctcatctctaagcaacaatatttgtgattcaga |
52818032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 11883086 - 11883209
Alignment:
| Q |
127 |
ttcaggttctagctttcaccaaggaataaagaaaagctccaattggagcaaagtgaaacatatagcttcttttagaaattctttgaataaaagtctgaat |
226 |
Q |
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| T |
11883086 |
ttcaggttttagttttcatctaggaataaaggcaagctccatttggagtaaagtgaaacttctagcttcgtgtccgaattcgttaaataaatgtcgggat |
11883185 |
T |
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| Q |
227 |
gcatcatctttgagctacaatatt |
250 |
Q |
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| T |
11883186 |
gtatcgtctttgagctataatatt |
11883209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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