View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8275_high_1 (Length: 379)
Name: NF8275_high_1
Description: NF8275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8275_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 46053809 - 46053449
Alignment:
| Q |
19 |
catcacgctcaatctgcaagaggggtcaataaaactaaatgagctcaaactgaaacagggtaccccacaagcgaatgaataaactggaaagtatgtactt |
118 |
Q |
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| T |
46053809 |
catcacgctcaatctgcaagaggggtcaataaaactaaatgagctcaaactgaaacagggcaccccacaagcgaatgaataaactggaaagtatgtactt |
46053710 |
T |
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| Q |
119 |
ctttcacaagaagtcaacaacgatgatgttaggattgaactccactaaagtacacaattaattctattaggtaaaataaacaatttcaactgttaatttc |
218 |
Q |
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| T |
46053709 |
ctttcacaagaagtcaacaaagatgatgttaggattgaactccactaaagtacacaattaattcaattaggtaaaataaacaatttgaactgttaatttc |
46053610 |
T |
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| Q |
219 |
aacgatctatgatgtgtttgaacattaaagcttgagaatatttaaccgaaaattaaatagctcatgttagacacaccaaattcatactttccattaacac |
318 |
Q |
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| T |
46053609 |
aacgatctatgatgtgtttgaacatcaaagcttgagaatatttaaccgaaaattaaatagctcatgttagacacaccaaattcatactttccattaacac |
46053510 |
T |
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| Q |
319 |
aattcaaactttgcaagagaatcataaattaaattttaaagcaaacctcttcaacataagc |
379 |
Q |
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| T |
46053509 |
aactcaaactttgcaagagaatcataaattaaattttaaagcaaacctcttcaacataagc |
46053449 |
T |
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