View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8275_low_1 (Length: 521)
Name: NF8275_low_1
Description: NF8275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8275_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 38128684 - 38129176
Alignment:
| Q |
16 |
acatcaataatctacaaaatgattactgtagaaaaaacaatgacatgtatacttgtagcatttttggcatgcttgccagatagacttgaatgagctggat |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128684 |
acatcaataatctagaaaatgattactgtagaaaaaacaatgacatgtatacttgtagcatttttggcatgcttgccagatagacttgaatgagctggat |
38128783 |
T |
|
| Q |
116 |
acactaaaattaatacacaccaaagacacaaacttttgtggtccaatatgtcttctgtataaagtcctaacttcaaccacccttatcctatgtctcttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128784 |
acactaaaattaatacacaccaaagacacaaacttttgtggtccaatatgtcttctgtataaagtcctaacttcaaccacccttatcctatgtctcttta |
38128883 |
T |
|
| Q |
216 |
ctaccatttccagaattgcaatggataaatcaaattctgttccatttctttctgtttttattatacttcttcttgtacatgtttctaattctcatgcagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128884 |
ctaccatttccagaattgcaatggataaatcaaattctgttccatttctttctgtttttattatacttcttcttgtacatgtttctaattctcatgcagc |
38128983 |
T |
|
| Q |
316 |
cccatcaagtgagtccatttatgtaacttttcttcagtgtcttaaaagccatactacccaaccaaatcaagtttccaacatagtctattcccaaaccaat |
415 |
Q |
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| T |
38128984 |
cccatcaagtgagtccatttatgtcacttttcttcagtgtcttaaaaaccatactacccaaccaaatcaagtttccaacatagtctattcccaaaccaat |
38129083 |
T |
|
| Q |
416 |
gcatcatacacctctatttttcaagcctttattagaaatgctaggttcaacaccccctccaccacaaaaccattacttatcatcacccctttg |
508 |
Q |
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| T |
38129084 |
gcatcatacacctctatttttcaagcctttattagaaatgctaggttcaacaccccctccaccacaaaaccattacttatcatcacccctttg |
38129176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 424
Target Start/End: Complemental strand, 487591 - 487373
Alignment:
| Q |
198 |
ttatcctatgtctctttactaccatttccagaattgcaatggataaatcaaattctgttccatttctttctgtttttattatacttcttcttgtacatgt |
297 |
Q |
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||||| |||||||||||| |||||||||||||||||||| ||||||||||||| | | | ||||||||||||| || ||||||||| |||||| |
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| T |
487591 |
ttatcttatgtctctttattaccatttccagaattgcaacggataaatcaaatgttctgcaatttctttctgttattggtatacttct------acatgt |
487498 |
T |
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| Q |
298 |
ttctaattctcatgcagccccatcaagtgagtccatttatgtaacttttcttcagtgtcttaaaagccatactacccaaccaaatcaagtttccaacata |
397 |
Q |
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| T |
487497 |
ttctaattatcatgtagccccatcaagcgagtgcatttatgtaacttttgttcattgtctgaaaaaccacacaactgcacaatatcaagtgttcaac--a |
487400 |
T |
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| Q |
398 |
gtctattcccaaaccaatgcatcatac |
424 |
Q |
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|||||||||||||||||||||||||| |
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| T |
487399 |
atctattcccaaaccaatgcatcatac |
487373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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