View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8276_low_1 (Length: 658)

Name: NF8276_low_1
Description: NF8276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8276_low_1
NF8276_low_1
[»] scaffold0774 (2 HSPs)
scaffold0774 (269-641)||(1167-1542)
scaffold0774 (1-271)||(841-1111)
[»] scaffold0065 (3 HSPs)
scaffold0065 (269-537)||(59988-60259)
scaffold0065 (151-266)||(60320-60435)
scaffold0065 (1-95)||(60486-60580)


Alignment Details
Target: scaffold0774 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 269 - 641
Target Start/End: Original strand, 1167 - 1542
Alignment:
Q  269 aacggctaggtgaagtatatggatgaatggcagtaatgccatgaaagatgtttctagacttgccaccaaagatcaaaacatctccagattccaaaagaat 368  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1167 aacggctagatgaagtatatggatgaatagcagtaatgccatgaaagatgtttctagacttgccaccaaagatcaaaacatctccagattccaaaagaat 1266  T
Q  369 tttatttgccttttcaacat---tttcatcaccatacaaaaactctgcggtgtctccaatagagaatgacacgatcggcaatccctcacgaatactttgt 465  Q
    ||||||||||||||||||||   ||  ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1267 tttatttgccttttcaacatcccttatatcaccatagaaaaactctgcggtgtctccaatagagaatgacacgaccggcaatccctcacgaatactttgt 1366  T
Q  466 tcacttacatgcttgtcctgcaaccaacctcagtcaatcagtctctcatgatttaaaatatgaaatgtaaatgcggtgttgtcaattccatatcgcaaaa 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1367 tcacttacatgcttgtcctgcaaccaacctcagtcaatcagtctctcatgatttaaaatatgaaatgtaaatgcggtgttgtcaattccatatcgcaaaa 1466  T
Q  566 aacagtagtttgttcgaattccactagctacatgctatagcaccacattttgtactacatagcatatcgcagaaca 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1467 aacagtagtttgttcgaattccactagctacatgctatagcaccacattttgtactacatagcatatcgcagaaca 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 841 - 1111
Alignment:
Q  1 tcaccaaggcagctcccatccacattaaggacaaaacaattctctttagaagtgtgccaagaaatggacctcgtagcattctgagaataattgaattatc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  841 tcaccaaggcagctcccatccacattcaggacaaaacaattctctttagaagggtgccaagaaatggaccttgtagcattctgagaataattgaattatc 940  T
Q  101 atataacagattgcaaatataatgagnnnnnnnnnnnnnnnnnnnnnnnnctaattcgaattttgtgataatatgaaaattaaattgaatattaccggca 200  Q
    ||||||||||||||||||||||||||                        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  941 atataacagattgcaaatataatgagaaaatataaaaagaaaaaaagaaactaattcgaattttgtgataatatgaaaattaaattgaatattaccggca 1040  T
Q  201 ggacaagcggtgttgattgagtgagaggatggtggttgaattgaggaccttgaccacgaacgagaattaac 271  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1041 ggacaagcggtgttggttgagtgagaggatggtggttgaattgaggacctttaccacgaacgagaattaac 1111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 269 - 537
Target Start/End: Complemental strand, 60259 - 59988
Alignment:
Q  269 aacggctaggtgaagtatatggatgaatggcagtaatgccatgaaagatgtttctagacttgccaccaaagatcaaaacatctccagattccaaaagaat 368  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||     
T  60259 aacggctaggtgaagtatatggatgaatagcagtaatgccatgaaagatgtttctagactttccaccaaatatcaaaacatctccaaattccaaaagaac 60160  T
Q  369 tttatttgccttttcaacat---tttcatcaccatacaaaaactctgcggtgtctccaatagagaatgacacgatcggcaatccctcacgaatactttgt 465  Q
    ||| |||||||| |||||||   |||| |||||||||||||||||||| |||| |||||||||||||||||| | ||| || ||  |||||||||||||     
T  60159 tttctttgccttgtcaacatccctttcgtcaccatacaaaaactctgcagtgtttccaatagagaatgacaccaccggaaaccctgcacgaatactttga 60060  T
Q  466 tcacttacatgcttgtcctgcaaccaacctcagtcaatcagtctctcatgatttaaaatatgaaatgtaaat 537  Q
    |||||||||||||||||||||||||||||  ||||||||||||  || |||||||||||||||| |||||||    
T  60059 tcacttacatgcttgtcctgcaaccaaccctagtcaatcagtccgtcgtgatttaaaatatgaattgtaaat 59988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 60435 - 60320
Alignment:
Q  151 ctaattcgaattttgtgataatatgaaaattaaattgaatattaccggcaggacaagcggtgttgattgagtgagaggatggtggttgaattgaggacct 250  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||  |||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  60435 ctaactcgaattttgtgatgatatgataattaaattgaatattaccggagggaggagcggtgttggttgagtgggaggatggtggttgaattgaggacct 60336  T
Q  251 tgaccacgaacgagaa 266  Q
    | ||||||| ||||||    
T  60335 ttaccacgaccgagaa 60320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 60580 - 60486
Alignment:
Q  1 tcaccaaggcagctcccatccacattaaggacaaaacaattctctttagaagtgtgccaagaaatggacctcgtagcattctgagaataattgaa 95  Q
    |||||||| |||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  60580 tcaccaagtcagctcccatccacattaaggacaaaacaattattcttagaagggtgccaagaaatctaccttgtagcattctgagaataattgaa 60486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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