View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8276_low_2 (Length: 551)
Name: NF8276_low_2
Description: NF8276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8276_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 43545531 - 43546050
Alignment:
| Q |
16 |
tggcaatgttgcaaaacgagaaagaggtgttttgtgaaagaaattgacacgtaaaatacatttattatttttcttgttaagacatgtaattggagcctga |
115 |
Q |
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| T |
43545531 |
tggcaatgttgcaaaatgagaaagaggtgttttgtgaaagaaattgacacgtaaaatacatttattatttttcttgttaagacatgtaattggagcctga |
43545630 |
T |
|
| Q |
116 |
aaaggttggaacagttgatacattaataccgcgtgcattgcagaaagaccctaatttaaaacatagttgagttgatgacacgcacctggaatgattggcg |
215 |
Q |
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| T |
43545631 |
aaaggttggaacagttgatacattaataccgcgtgcattgcagaaagaccctaatttaaaacagagttgagttgatgacacgcacctggaatgattggcg |
43545730 |
T |
|
| Q |
216 |
atcccttttgttttaaaggaccttgagtgtggttgcaaagcatgcatggtttctttggctcttttcagttttcactatgctgcattaacaaacgacctat |
315 |
Q |
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| T |
43545731 |
atcccttttgttttaaaggaccttgagtgtggttgcaaagcatgcatggtttctttggctcttttcagttttcactatgctgcattaacaaacgacctat |
43545830 |
T |
|
| Q |
316 |
aatttcaggtttgatcacatgttctttctcttttactacttgctactagaaattcattattcattctattaagaaatttagtttatattagtaaagtggc |
415 |
Q |
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| T |
43545831 |
aatttcaggtttgatcacatgttctttctcttttactacttgccactagaaatttattattcattctattaagaaatttagtttatattagtaaagtggc |
43545930 |
T |
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| Q |
416 |
gactgacaagttgaaaccataaccagtaactgtatctcacaagtctagaatctcaacttattgaatttaataaggaggtttcgaccac-ttatcttcttt |
514 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43545931 |
gactcacaagttgaaaccataaccagtaactgtatctcacaagtctagaatctcaacttattgaatttaataaggaggtttcgaccactttatcttcttt |
43546030 |
T |
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| Q |
515 |
ggtatctaacttattaatgt |
534 |
Q |
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| T |
43546031 |
ggtatctaacttattaatgt |
43546050 |
T |
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