View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8276_low_3 (Length: 543)
Name: NF8276_low_3
Description: NF8276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8276_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 22 - 537
Target Start/End: Original strand, 28531331 - 28531846
Alignment:
| Q |
22 |
agtacatcccaatggagcaattgagcttttatcatcaaggagttggagcagggcctgaatatattggtgttcctgccacttattttcctttgaggaaagg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531331 |
agtacatcccaatggagcaattgagcttttatcatcaaggagttggagcagggcctgaatatattggtgttcctgccacttattttcctttgaggaaagg |
28531430 |
T |
|
| Q |
122 |
gggaaatgttactctatatcaagatgctcatgttccagatggtagcctccctaatgtgttgcttgatagtgggatgttttatgtgaatggaaagtgttgg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531431 |
gggaaatgttactctatatcaagatgctcatgttccagatggtagcctccctaatgtgttgcttgatagtgggatgttttatgtgaatggaaagtgttgg |
28531530 |
T |
|
| Q |
222 |
catgacatatttgatgccataagtcaagctcgccgcttgatatatattacaggatggtcggtgtggcacaaagttaggttgataagggatgccggttaca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531531 |
catgacatatttgatgccataagtcaagctcgccgcttgatatatattacaggatggtcggtgtggcacaaagttaggttgataagggatgccggttaca |
28531630 |
T |
|
| Q |
322 |
gttccgattataccttaggtgatcttctgaagacaaagtcacaagaaggagtaagagtgcttctccttatttgggatgatcctacatcaagaagtatttt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531631 |
gttccgattataccttaggtgatcttctgaagacaaagtcacaagaaggagtaagagtgcttctccttatttgggatgatcctacatcaagaagtatttt |
28531730 |
T |
|
| Q |
422 |
gggttataaaacagtaagtcatgcaannnnnnngttatatatactttcatttctgtgcttggaatggctggtaggatttggatgcgaatttcatgcagtg |
521 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28531731 |
gggttataaaacagtaagtcatgcaatttttttgttatatatactttcatttctgtgcttggaatggctggtaggatttggatgcgaatttcatgcagtg |
28531830 |
T |
|
| Q |
522 |
tgctcatctctgcttc |
537 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
28531831 |
tgctcatctttgcttc |
28531846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 30 - 439
Target Start/End: Complemental strand, 12695448 - 12695027
Alignment:
| Q |
30 |
ccaatggagcaattgagcttttatcatcaaggagttggagcagggcctgaatatattggtgttcctgccacttattttcctttgaggaaagggggaaatg |
129 |
Q |
| |
|
||||||||| || ||| | ||||||||||||||||||||||||| ||| | ||||||||||| || | || |||||||| ||||||||||| |||| || |
|
|
| T |
12695448 |
ccaatggagaaactgatcatttatcatcaaggagttggagcaggacctaactatattggtgtgccgggaacatattttccattgaggaaaggtggaactg |
12695349 |
T |
|
| Q |
130 |
ttactctatatcaagatgctcatgttccagatggtagcctccctaatgtgttgcttgatagtgggatgttttatgtgaatggaaagtgttggcatgacat |
229 |
Q |
| |
|
| ||||||||||| |||||||||||||| ||||| | ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||| ||| || |
|
|
| T |
12695348 |
taactctatatcaggatgctcatgttccggatggatgtctccctaatgtcatgcttgatcatgggatgcattatgttcatggacagtgttggcttgatat |
12695249 |
T |
|
| Q |
230 |
atttgatgccataagtcaagctcgccgcttgatatatattacaggatggtcggtgtggcacaaagttaggttgataaggga------tgccggttacagt |
323 |
Q |
| |
|
||||||||||| ||||||| || ||| | || |||||||| ||||| ||||||||||||||| ||||| ||||||| ||| || || || |
|
|
| T |
12695248 |
ggttgatgccatacgtcaagcgaagcgtttggtttacattacagggtggtcagtgtggcacaaagttcggttggtaagggacgctcctgctggatatggt |
12695149 |
T |
|
| Q |
324 |
------tccgattataccttaggtgatcttctgaagacaaagtcacaagaaggagtaagagtgcttctccttatttgggatgatcctacatcaagaagta |
417 |
Q |
| |
|
|| |||||||| | ||||| ||||||| | | ||||| || |||||||| ||||||||||| ||| |||||||||| ||||| |||||||| | |
|
|
| T |
12695148 |
aagacatcggattatactcttggtgagcttctgaggtctaagtctcaggaaggagtgagagtgcttcttcttgtttgggatgaccctacctcaagaagca |
12695049 |
T |
|
| Q |
418 |
ttttgggttataaaacagtaag |
439 |
Q |
| |
|
|| | ||||||||||| ||||| |
|
|
| T |
12695048 |
ttcttggttataaaacggtaag |
12695027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Complemental strand, 3114826 - 3114747
Alignment:
| Q |
327 |
gattataccttaggtgatcttctgaagacaaagtcacaagaaggagtaagagtgcttctccttatttgggatgatcctac |
406 |
Q |
| |
|
|||| ||| |||||||||||||| || | || ||||||||||| || ||||||||||| ||| | |||||||||||||| |
|
|
| T |
3114826 |
gattgtacattaggtgatcttctcaaagctaaatcacaagaaggtgtgagagtgcttctacttgtgtgggatgatcctac |
3114747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Complemental strand, 3120682 - 3120603
Alignment:
| Q |
327 |
gattataccttaggtgatcttctgaagacaaagtcacaagaaggagtaagagtgcttctccttatttgggatgatcctac |
406 |
Q |
| |
|
|||| ||| |||||||||||||| || | || ||||||||||| || ||||||||||| ||| | |||||||||||||| |
|
|
| T |
3120682 |
gattgtacattaggtgatcttctcaaagctaaatcacaagaaggtgtgagagtgcttctacttgtgtgggatgatcctac |
3120603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 3120928 - 3120860
Alignment:
| Q |
90 |
gttcctgccacttattttcctttgaggaaagggggaaatgttactctatatcaagatgctcatgttcca |
158 |
Q |
| |
|
|||||||| || |||||||| | || ||||| ||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
3120928 |
gttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttcca |
3120860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University