View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8276_low_4 (Length: 383)

Name: NF8276_low_4
Description: NF8276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8276_low_4
NF8276_low_4
[»] chr1 (3 HSPs)
chr1 (17-368)||(39487321-39487673)
chr1 (217-367)||(931791-931945)
chr1 (222-266)||(14762510-14762554)
[»] chr7 (1 HSPs)
chr7 (179-368)||(28164760-28164949)
[»] chr8 (5 HSPs)
chr8 (222-368)||(15552354-15552500)
chr8 (217-362)||(17915107-17915252)
chr8 (217-368)||(31498471-31498625)
chr8 (217-362)||(21356094-21356239)
chr8 (225-368)||(1236148-1236294)
[»] chr2 (3 HSPs)
chr2 (225-368)||(32742102-32742245)
chr2 (224-368)||(37904583-37904726)
chr2 (233-368)||(12314161-12314295)
[»] chr4 (5 HSPs)
chr4 (217-368)||(34413255-34413408)
chr4 (222-368)||(53189439-53189587)
chr4 (228-368)||(13938765-13938906)
chr4 (217-282)||(49228835-49228900)
chr4 (274-368)||(49228257-49228354)
[»] chr6 (1 HSPs)
chr6 (226-368)||(647794-647935)
[»] chr3 (2 HSPs)
chr3 (224-321)||(52582001-52582098)
chr3 (224-368)||(43424004-43424152)
[»] chr5 (7 HSPs)
chr5 (252-368)||(36836781-36836900)
chr5 (222-360)||(14043189-14043328)
chr5 (293-368)||(5540179-5540254)
chr5 (273-368)||(10023807-10023903)
chr5 (222-273)||(10032029-10032080)
chr5 (224-268)||(36836912-36836956)
chr5 (224-266)||(5540130-5540172)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 39487321 - 39487673
Alignment:
Q  17 aggagagaaattatcatttgctaaagacatggtgtatgcaatgtttgggtcttctcacgattgagtttttgctcggtagatattattcttaggctaaagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  39487321 aggagagaaattatcatttgctaaagacatggtgtatgcaatgtttgggtcttcttacgatttagtttttgctcggtagatattattcttgggctaaagt 39487420  T
Q  117 agtatttggacctcgtaaacgatgagcatgaacttttaccttgtccaaaactataaatgtactacttcctctggtctcaaatgtaagaaac-nnnnnnnn 215  Q
    |||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||||||||| || |||   ||| || || ||||||||             
T  39487421 agtatttggacctcgtaagcggcgagcatgagcttttaccttgtccaaaactataaatgtacttctcccttccgtcccagatataagaaacaaaaaaaat 39487520  T
Q  216 ttgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaa 315  Q
    || || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  39487521 ttacacacatattaagaaagtggattgatcacatttaagtcattataaaaagtgatatttttctaattttacccttgttttggagtagtaaagacattaa 39487620  T
Q  316 tgagatatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    |||||| | ||||||||||||||| |||||||| || ||||||||||||||||    
T  39487621 tgagatgtgtttaatgagggtaaatttggaattctgacatttaataggttcat 39487673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 217 - 367
Target Start/End: Complemental strand, 931945 - 931791
Alignment:
Q  217 tgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatat-ttttctaattttacccttatcttggagtagtaaagacattaa 315  Q
    |||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||    
T  931945 tgcacacatattaagaaagtagattgatcacatttaagtcattataaaaagtgatattttttgcaattttacccttgtcttggagtagtaaagacattaa 931846  T
Q  316 tgaga---tatatttaatgagggtaaacttggaattgtggcatttaataggttca 367  Q
    ||| |   |   |||||||||||||||||| ||||||||||||||||||| ||||    
T  931845 tgataaagtgactttaatgagggtaaacttagaattgtggcatttaatagattca 931791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 14762510 - 14762554
Alignment:
Q  222 acatattaagaaagtggattgaccacatttaagttattataaaaa 266  Q
    ||||||||||||||||||||||| |||||||||| || |||||||    
T  14762510 acatattaagaaagtggattgactacatttaagtcatgataaaaa 14762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 179 - 368
Target Start/End: Original strand, 28164760 - 28164949
Alignment:
Q  179 tacttcctctggtctcaaatgtaagaaacnnnnnnnnttgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttc 278  Q
    |||| |||| |||||||||||||||||||         |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28164760 tactccctccggtctcaaatgtaagaaacaaaaaaaaatgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgatatttttc 28164859  T
Q  279 taattttacccttatcttggagtagtaaagacattaatgagatatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||||||||||||    
T  28164860 taattttacccttgtcttgaagtagtaaagacattaatgaggtggatttaatgagggtaaaactggaattgtggcatttaataggttcat 28164949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 222 - 368
Target Start/End: Complemental strand, 15552500 - 15552354
Alignment:
Q  222 acatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatgagat 321  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |    
T  15552500 acatattaagaaagtggattgaccacatttaagtcattgtaaaaagtgatatttttctaattttacccttgtcttgaagtagtaaagacattaatgaggt 15552401  T
Q  322 atatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
       |||||||||||||||||||||||||| |||||||||||||||||    
T  15552400 gggtttaatgagggtaaacttggaattgttgcatttaataggttcat 15552354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 17915252 - 17915107
Alignment:
Q  217 tgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaat 316  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||    
T  17915252 tgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgatatttttctagttttacccttgtcttggagtagtaaatacatcaat 17915153  T
Q  317 gagatatatttaatgagggtaaacttggaattgtggcatttaatag 362  Q
    ||| |   |||||||||||||||| | |||||||||||||||||||    
T  17915152 gaggtgggtttaatgagggtaaacctagaattgtggcatttaatag 17915107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 31498471 - 31498625
Alignment:
Q  217 tgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaat 316  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||| | ||||||||||||||||||||||    
T  31498471 tgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtgatattttttcaattttaccctttttttggagtagtaaagacattaat 31498570  T
Q  317 gaga---tatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    || |   |   |||||||||||||||||| |||||||| ||||||||||||||||    
T  31498571 gataaagtgagtttaatgagggtaaactttgaattgtgacatttaataggttcat 31498625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 21356239 - 21356094
Alignment:
Q  217 tgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaat 316  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||| |    
T  21356239 tgcacacatattaagaaagtggattgaccatatttaagtcattataaaatgtgaaatttttctaaatttacccttgtcttggagtagtaaagacattatt 21356140  T
Q  317 gagatatatttaatgagggtaaacttggaattgtggcatttaatag 362  Q
    ||| |   ||||||||||||||| ||| ||||||||||||||||||    
T  21356139 gaggtgagtttaatgagggtaaatttgaaattgtggcatttaatag 21356094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 1236148 - 1236294
Alignment:
Q  225 tattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatga-ga--t 321  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| ||  |    
T  1236148 tattaagaaagtggattgaccacatttaagtcattataaaaagtgatattttttcaattttacccttgtcttggagtagtaaagaccttaatgatgaagt 1236247  T
Q  322 atatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
       ||||||||||||||| ||||||||||| ||||||||||||||||    
T  1236248 gagtttaatgagggtaaatttggaattgtgacatttaataggttcat 1236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 32742102 - 32742245
Alignment:
Q  225 tattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatgagatata 324  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||  |       
T  32742102 tattaagaaagtggattgaccacatttaagtcattataaaaagtattatttttctaattttacccttgtcttggagtagtaaagacattaatgaagtggt 32742201  T
Q  325 tttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  32742202 tttaatgagggtaaacttgaaatagtggcatttaataggttcat 32742245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 368
Target Start/End: Complemental strand, 37904726 - 37904583
Alignment:
Q  224 atattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatgagatat 323  Q
    |||||||||||||||||||||||||||||| | ||||||||| |||||||||||  | |||||||||| |||||||||||||| ||||||||| || |      
T  37904726 atattaagaaagtggattgaccacatttaaatcattataaaa-gtgatattttttcagttttacccttgtcttggagtagtaatgacattaataaggtga 37904628  T
Q  324 atttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
     ||||||||||||||||||  ||||||||||||||||| ||||||    
T  37904627 gtttaatgagggtaaacttaaaattgtggcatttaataagttcat 37904583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 368
Target Start/End: Original strand, 12314161 - 12314295
Alignment:
Q  233 aagtggattgaccacatttaagttattataaaaag---tgatatttttctaattttacccttatcttggagtagtaaagacattaatgagatatatttaa 329  Q
    ||||||||||||||||||||| | |||||||||||   |  |||||||||||||||||||||  |||||| ||||||||||||||| | | |   |||||    
T  12314161 aagtggattgaccacatttaaatcattataaaaagtattagtatttttctaattttacccttgacttggactagtaaagacattaa-gtggt---tttaa 12314256  T
Q  330 tgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    |||||||||| ||||||||||| ||||||| | ||||||    
T  12314257 tgagggtaaatttggaattgtgacatttaaaaagttcat 12314295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 368
Target Start/End: Complemental strand, 34413408 - 34413255
Alignment:
Q  217 tgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaat 316  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||| || | |||||| |||||||||||||||    
T  34413408 tgcacacatattaagaaagtggattgaccacatttaagtcattataaaaagtaatatttttc-aattataccattgttttggagcagtaaagacattaat 34413310  T
Q  317 ga-ga--tatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    || ||  |   |||||||||| |||||||||||||||||||||||||||||||||    
T  34413309 gatgaagtgggtttaatgaggataaacttggaattgtggcatttaataggttcat 34413255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 222 - 368
Target Start/End: Original strand, 53189439 - 53189587
Alignment:
Q  222 acatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatga-ga 320  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||| || ||||||||||||||| ||||||| ||    
T  53189439 acatattaagaaagtggattgaccacatttaagtcattat-aaaagtgatgtttttccaattttacccttgtcctggagtagtaaagacgttaatgatga 53189537  T
Q  321 --tatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
      |   ||||||||||||||||||   |||| ||||||||||||||||||    
T  53189538 agtgggtttaatgagggtaaacttcatattgcggcatttaataggttcat 53189587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 368
Target Start/End: Original strand, 13938765 - 13938906
Alignment:
Q  228 taagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacatta---atgagatata 324  Q
    ||||||| |||||||||||||||||||| ||||||||  |||||||||||| |||||||||||| ||||| ||||||| ||||||||   ||||  |       
T  13938765 taagaaaatggattgaccacatttaagtaattataaa--gtgatatttttccaattttacccttgtcttgtagtagtagagacattaacgatgaagtggg 13938862  T
Q  325 tttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  13938863 tttaatgagggtaaacttgggatagtggcatttaataggttcat 13938906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 49228900 - 49228835
Alignment:
Q  217 tgcaaacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaat 282  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49228900 tgcacacatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttttaat 49228835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 49228354 - 49228257
Alignment:
Q  274 ttttctaattttacccttatcttggagtagtaaagacattaatga-gatata--tttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    |||| |||||||||| || | ||||||||||||||| |||||||| ||  |   ||||||||||||||| ||||||||||||||||||||||||||||    
T  49228354 ttttttaattttacctttgttttggagtagtaaagatattaatgatgaagtgggtttaatgagggtaaaattggaattgtggcatttaataggttcat 49228257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 647794 - 647935
Alignment:
Q  226 attaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatgagatatat 325  Q
    ||||| ||||||||||||| |||||||||| ||||||||| ||  ||||||| ||||||||| ||| ||||| ||||||||||||||||||||  |   |    
T  647794 attaaaaaagtggattgactacatttaagtcattataaaaggtattattttt-taattttactcttgtcttgaagtagtaaagacattaatgaagtggtt 647892  T
Q  326 ttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  647893 ttaatgagggtaaacatggaatagtggcatttaataggttcat 647935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 52582001 - 52582098
Alignment:
Q  224 atattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatgagat 321  Q
    |||||||||||||| |||||||| |||||||| |||||||||||| |||||||| ||||||||| ||||||||  |||||||||||||||||||||||    
T  52582001 atattaagaaagtgaattgaccatatttaagtcattataaaaagttatatttttttaattttactcttatcttacagtagtaaagacattaatgagat 52582098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 368
Target Start/End: Original strand, 43424004 - 43424152
Alignment:
Q  224 atattaagaaa--gtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatga-ga 320  Q
    |||||||||||  ||||| |||||||||| || | |||||||||||||||||||||  ||||||||| || |||| |||||||||||| |||||||| ||    
T  43424004 atattaagaaaacgtggaatgaccacatt-aattcattataaaaagtgatattttttcaattttaccattgtcttagagtagtaaagaaattaatgatga 43424102  T
Q  321 --tatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
      |   |||||| |||||||| ||||||||||| ||||||||||||||||    
T  43424103 agtgggtttaattagggtaaaattggaattgtgtcatttaataggttcat 43424152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 36836900 - 36836781
Alignment:
Q  252 aagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatga-ga--tatatttaatgagggtaaacttggaatt 348  Q
    |||| |||||||||||||||||||||  |||||||||||| |||| ||||||||||||||||||||| ||  |   |||| |||||||||||||||||||    
T  36836900 aagtcattataaaaagtgatattttttcaattttacccttgtcttagagtagtaaagacattaatgatgaagtgggtttagtgagggtaaacttggaatt 36836801  T
Q  349 gtggcatttaataggttcat 368  Q
    ||||||||||||||||||||    
T  36836800 gtggcatttaataggttcat 36836781  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 360
Target Start/End: Original strand, 14043189 - 14043328
Alignment:
Q  222 acatattaagaaagtggattgaccacatttaagttattataaaaagtgatatttttctaattttacccttatcttggagtagtaaagacattaatga-ga 320  Q
    |||| |||||||||||||||||||| |||||||  |||||||||||||||||||||  |||||||||||| ||||||||||||  |||||||||||| ||    
T  14043189 acatgttaagaaagtggattgaccatatttaagacattataaaaagtgatattttttcaattttacccttgtcttggagtagt--agacattaatgatga 14043286  T
Q  321 --tatatttaatgagggtaaacttggaattgtggcatttaat 360  Q
      |   ||||||||||||||||||  |||||| |||||||||    
T  14043287 agtgagtttaatgagggtaaacttaaaattgtcgcatttaat 14043328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 368
Target Start/End: Original strand, 5540179 - 5540254
Alignment:
Q  293 tcttggagtagtaaagacattaatgagatatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    ||||| ||||||||||||||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||||    
T  5540179 tcttgaagtagtaaagacattaatgaagtgggtttaatgtgggtaaacttggaattgtggcatttaataggttcat 5540254  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 368
Target Start/End: Complemental strand, 10023903 - 10023807
Alignment:
Q  273 tttttctaattttacccttatcttggagtagt-aaagacattaatgagatatatttaatgagggtaaacttggaattgtggcatttaataggttcat 368  Q
    ||||||||||||||||||| |||||||||||| ||| | ||||||||| |   |||||| |||||||||||| ||||||| || |||||||||||||    
T  10023903 tttttctaattttacccttgtcttggagtagtaaaaaaaattaatgaggtgggtttaataagggtaaacttgaaattgtgacacttaataggttcat 10023807  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 10032080 - 10032029
Alignment:
Q  222 acatattaagaaagtggattgaccacatttaagttattataaaaagtgatat 273  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  10032080 acatattaagaaagtagattgatcacatttaagtcattataaaaagtgatat 10032029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 36836956 - 36836912
Alignment:
Q  224 atattaagaaagtggattgaccacatttaagttattataaaaagt 268  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  36836956 atattaagaaagtggattgaccatatttaagtcattataaaaagt 36836912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 5540130 - 5540172
Alignment:
Q  224 atattaagaaagtggattgaccacatttaagttattataaaaa 266  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  5540130 atattaagaaagtggattgatcacatttaagtcattataaaaa 5540172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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