View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8276_low_5 (Length: 309)
Name: NF8276_low_5
Description: NF8276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8276_low_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 33970673 - 33970981
Alignment:
| Q |
1 |
accaagtaccctaatagtcgtctcaaaaacagaaaccgttttattctgcaaaccaaccaaacatagaataaaccaaccatatccaaataaataaataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33970673 |
accaagtaccctaatagtcgtctcaaaaacagaaaccgttttattctgcaaaccagccaaacatagaataaaccaaccatatccaaataaataaataaaa |
33970772 |
T |
|
| Q |
101 |
ctttttaacattttactgaaatcaataataattagaatgaattagttgactctactcactatcatatcaaagcgaagatttttaccaatccattcaacag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33970773 |
ctttttaacattttacttaaatcaataataattagaatgaattagttgattctactcactatcatatcaaagcgaagatttttaccaatccattcaacag |
33970872 |
T |
|
| Q |
201 |
aagctgcaaaccgttcacgatcaccaagtaacgccaaagtatccaacgaatcaatctgcatttcatttcaatttcaatttcagtatacaccgataataat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33970873 |
aagctgcaaaccgttcacgatcaccaagtaacgccaaagtatccaacgaatcaatctgcatttcatttcaatttcaatttcagtatacaccaataataat |
33970972 |
T |
|
| Q |
301 |
ttgagaaaa |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
33970973 |
ttgagaaaa |
33970981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University