View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8277_high_1 (Length: 655)

Name: NF8277_high_1
Description: NF8277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8277_high_1
NF8277_high_1
[»] chr8 (2 HSPs)
chr8 (1-643)||(29058747-29059389)
chr8 (270-343)||(33554223-33554296)
[»] chr4 (1 HSPs)
chr4 (274-405)||(23713459-23713590)
[»] chr2 (3 HSPs)
chr2 (502-598)||(2243944-2244040)
chr2 (274-426)||(33151630-33151782)
chr2 (329-421)||(44433624-44433715)
[»] chr3 (3 HSPs)
chr3 (327-389)||(50488178-50488240)
chr3 (305-398)||(20770183-20770276)
chr3 (282-380)||(25552053-25552150)
[»] chr1 (1 HSPs)
chr1 (311-422)||(32854797-32854908)
[»] chr7 (1 HSPs)
chr7 (280-370)||(17940223-17940313)


Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 29058747 - 29059389
Alignment:
Q  1 catattctatcattaggtgatgttaggtagaaggtctaacgttggctatgtcaatagtatttaaagactgattcttaatatactatggccggccgtttta 100  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29058747 catattctatcataaggtgatgttaggtagaaggtgtaacgttggctatgtcaatagtatttaaagactgattcttagtatactatggccggccgtttta 29058846  T
Q  101 tgatttaatatttctcattaaatgttgtgaagatgataccaatgctttgaacatgtgaagacaaagggaaatgaatggctttttgttgcagtcttatgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29058847 tgatttaatatttctcattaaatgttgtgaagatgataccaatgctttgaacatgtgaagacaaagggaaatgaatggctttttgttgtagtcttatgag 29058946  T
Q  201 atgagaacaaatttcatcatagaatggataagaaggaatcaagtaatttcctcaatattaactccatggtttgggatttggatttggtgcagtaactgca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29058947 atgagaacaaatttcatcatagaatggataagaaggaatcaagtaatttcctcaatattaactccatggtttgggatttggatttggtgcagtaactgcg 29059046  T
Q  301 tcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059047 tcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcatttaaaactgattttgttaatgcgtaatataaaccgtccgatctcaga 29059146  T
Q  401 ttaactgccaatatcctttactgcatagaaatgtgtggttttcttgctgcggggaatctgcgtccatggtttgatactatgctagctctgcagacacatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059147 ttaactgccaatatcctttactgcatagaaatgtgtggttttcttgctgcggggaatctgcgtccatggtttgatactatgctagctctgcagacacatt 29059246  T
Q  501 cttgtactaggatcatactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatatagcatccnn 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      
T  29059247 cttgtactaggatcatactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatgtagcatcctt 29059346  T
Q  601 nnnnnaaacatgtttctttgacggttttatcttgccacaggtt 643  Q
         ||||||||| ||||||||||||||||||||||||||||    
T  29059347 tttttaaacatgttgctttgacggttttatcttgccacaggtt 29059389  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 33554223 - 33554296
Alignment:
Q  270 tttgggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacag 343  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||||||| || || | |||||||||||||||    
T  33554223 tttgggatttggatttggtgcagtaattgtgtcacgcagttttcgatctcaactgtccgatctcaaattaacag 33554296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 274 - 405
Target Start/End: Complemental strand, 23713590 - 23713459
Alignment:
Q  274 ggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaat 373  Q
    |||||||||||| ||||||||||| ||||| | ||||||| | ||| || |||||||||||| ||||||| ||||||| ||| ||||||||||||||| |    
T  23713590 ggatttggattttgtgcagtaactacatcacgtagttttcaacctcaacagttcaatctcaagttaacagtcgagatctttttaaactgattttgttatt 23713491  T
Q  374 gcgtaatataaaccgtccgatctcagattaac 405  Q
    | ||||| | ||| |||| |||||||||||||    
T  23713490 gtgtaatctgaactgtccaatctcagattaac 23713459  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 598
Target Start/End: Complemental strand, 2244040 - 2243944
Alignment:
Q  502 ttgtactaggatcatactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatatagcatcc 598  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||| |||||| || ||||||  |||||||||||  ||||||||||| || |||||    
T  2244040 ttgtgctaggatcatactcccgtaagcctgacaaaacttggcgcgcaagtttattaagcctttgactgatccaatagttgtgaataatgtaacatcc 2243944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 33151630 - 33151782
Alignment:
Q  274 ggatttggatttggtgcagtaactgcatcaagcagtttt-cgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaa 372  Q
    |||||| ||||||||||| |||||||||||  | ||||| ||||||| |||     |||| |||||||   |||||||||||||||||||| |||||||     
T  33151630 ggatttagatttggtgcattaactgcatcacacggtttttcgatctcaaccacctgatcttaaattaatgtccgagatcgtttaaaactga-tttgttat 33151728  T
Q  373 tgcgtaatataaaccgtccgatctcagattaactgccaatatcctttactgcat 426  Q
    || ||||| |||||| |||||| ||| || ||| ||||||||| ||||| ||||    
T  33151729 tgtgtaatttaaaccctccgatttcatatgaacggccaatatcatttaccgcat 33151782  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 44433624 - 44433715
Alignment:
Q  329 atctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgccaatatcctttac 421  Q
    ||||||||||||||| |||||| | || || |||||||||||| |  ||||| |||||||| | |||||| |||||| | ||||||| |||||    
T  44433624 atctcaaattaacagtcgagattgctttaa-ctgattttgttattctgtaatctaaaccgtacaatctcatattaacggtcaatatcgtttac 44433715  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 50488178 - 50488240
Alignment:
Q  327 caatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgt 389  Q
    ||||||||||||||||| ||||||||||||||| |||||||| || || ||||| ||||||||    
T  50488178 caatctcaaattaacagtcgagatcgtttaaaattgattttggtattgtgtaatgtaaaccgt 50488240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 20770183 - 20770276
Alignment:
Q  305 gcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctca 398  Q
    ||||||||  ||||| ||||||| ||||||||||||| | |||||| |||| || |||||||||||| || ||||| | || ||||||||||||    
T  20770183 gcagttttgcatctcaaccgttcgatctcaaattaacggacgagattgtttcaagctgattttgttattgggtaatctgaatcgtccgatctca 20770276  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 25552053 - 25552150
Alignment:
Q  282 atttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaat 380  Q
    |||||||||||||  ||| ||| |||| |||| ||||| ||||| | ||||||||||||||| |||||| |||| |||||||||||  || ||||||||    
T  25552053 atttggtgcagtatttgcgtcatgcagatttcaatctcaaccgtccgatctcaaattaacagtcgagatagttt-aaactgattttaatattgcgtaat 25552150  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 422
Target Start/End: Original strand, 32854797 - 32854908
Alignment:
Q  311 ttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgcca 410  Q
    ||||||||| ||| | | || ||||||||||||| |||||||||| || || |||||| || || | ||||||| | ||| |||||||||||||| | ||    
T  32854797 ttcgatctcaaccatccgatatcaaattaacagctgagatcgtttgaagctaattttgatattgtgaaatataagctgtcagatctcagattaacggtca 32854896  T
Q  411 atatcctttact 422  Q
    | ||| ||||||    
T  32854897 agatcgtttact 32854908  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 17940313 - 17940223
Alignment:
Q  280 ggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgtt 370  Q
    |||||||||||||||||||| ||| ||||||||| |||||  ||||   |||||| |||||||  | ||||| ||| |||||||| |||||    
T  17940313 ggatttggtgcagtaactgcgtcacgcagttttcaatctcatccgtgtgatctcagattaacaatcaagatccttttaaactgatcttgtt 17940223  T

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