View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8277_low_2 (Length: 591)
Name: NF8277_low_2
Description: NF8277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8277_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 580
Target Start/End: Original strand, 4823711 - 4824273
Alignment:
| Q |
15 |
acggtggtggttggaaaagagaagaaggtgttcctcgtagaccctatcatattacaagaaaatccatttaaggttttgatggatatctcaatgaagaagg |
114 |
Q |
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| T |
4823711 |
acggtggtggttggaaaagagaagaaggtgttcctcgtagaccctatcatattacaagaaaatccatttaaggttttgatggatatctcaatgaagaagg |
4823810 |
T |
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| Q |
115 |
atccaacaaagaaaaagaaggatcatttccatttttcatcaagtcagcaaagagttatctttgtggatgttgatgatattttgtttgagcacatgttgtg |
214 |
Q |
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| T |
4823811 |
atccaacaaagaaaaagaaggatcatttccatttttcatcaagtcagcaaagagttatctttgtggatgttgatgatattttgtttgagcacatgttgtg |
4823910 |
T |
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| Q |
215 |
gcttatgaacaatgatacatcttctttgtttcagctgaatttgaaggatattgttgatttttattctcatgatgatatgtaatattgttctaaatttaca |
314 |
Q |
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| T |
4823911 |
gcttatgaacaatgatacatcttctttgtttcagctgaatttgaaggatattgttgatttttatactcatgatgatatgtaatattgttctaaatttaca |
4824010 |
T |
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| Q |
315 |
gagtactttagctttcctaacagcagaggtaaggtactatgttaattttacattaattttctgttcatacttcaatgttatttctttgtgaaatacagaa |
414 |
Q |
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| T |
4824011 |
gagtactttagctttcttaacagcagaggtaaggtactatgttaattttacattaattttctgttcatacttcaatgttatttctttgtgaaatacagaa |
4824110 |
T |
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| Q |
415 |
ggaacacttagcatcttgtaatatgtatctaatgaacataaaccattgctaatattatattattttactcaaataattattatagaatattacgacgtaa |
514 |
Q |
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| T |
4824111 |
ggaacacttagcatcttgtaatatgtatctaatgaacataacccattgctaatattgtattattttactcaaataattatgatagaatattacgacgtga |
4824210 |
T |
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| Q |
515 |
tttgatcatgcagtcgattttttcatttactgagattaaatttgtttgttgctattgatgtccatc |
580 |
Q |
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| T |
4824211 |
tttgatcatgtagttga---tttcatttactgggattaaatttgtttgttgctattgttgttcatc |
4824273 |
T |
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