View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8277_low_6 (Length: 211)
Name: NF8277_low_6
Description: NF8277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8277_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44653443 - 44653525
Alignment:
| Q |
1 |
ttaaacataatttatataatcacatggcaagaagtttaattagaaaaactggaagtctatttaaacataatttatatacccga |
83 |
Q |
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| T |
44653443 |
ttaaacataatttatataatcacatggcaagaaatttaattaaaaaaactggaagtctatttaaacataatatatatatccga |
44653525 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 44653411 - 44653361
Alignment:
| Q |
139 |
tgtatttaaacataggtcattttcgttcagaatcacttcctaacgacataattttc |
194 |
Q |
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| T |
44653411 |
tgtatttaaacataggtcattttcattcagaa-----tcctaacgacataattttc |
44653361 |
T |
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