View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_high_2 (Length: 334)
Name: NF8278_high_2
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 55940081 - 55939762
Alignment:
| Q |
15 |
aaagatctgttcttgacttctacatatttattcgaatttcatttagccacatccagcaatatatatcttctcattctttaggtattttcctgacttacca |
114 |
Q |
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| T |
55940081 |
aaagatctgttcttgacttctacatatttattcgaatttcatttagccacatccagcaatatatatcttctcattctttaggtattttcctgacttacta |
55939982 |
T |
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| Q |
115 |
atcaagttttaccacatgtaccatatccattatcatccagttctatgttaagattgctagcactttccaataaaagtagtgctagcaaaacaatctcttt |
214 |
Q |
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| T |
55939981 |
atcaagttttaccacatgtaccatatccattatcatccagttctatgttaagattgctagcactttccaataaaagtagtgctagcaaaacaatctcttt |
55939882 |
T |
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| Q |
215 |
tcaacttgattgataaacttcgtctagaacaccctaaatcgcgtggagtttataagaatttcatccaattataaatagagcgttgaaaaagagagtgtta |
314 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55939881 |
tcaacttgattgataaactttgtctagaacactctaaatcgcgtggaatttataagaatttcatccaattataaatagagcgttgaaaaagagagtgtta |
55939782 |
T |
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| Q |
315 |
gatagtatgtttacggccaa |
334 |
Q |
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| T |
55939781 |
gatagtatgtttacggccaa |
55939762 |
T |
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