View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_high_3 (Length: 252)
Name: NF8278_high_3
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 55939758 - 55939514
Alignment:
| Q |
1 |
taatacaattagacagggtttcatatacatattccctttaactaaaaacatattacttagcatatttattagatgtaaaagactaatgtaaactaagaac |
100 |
Q |
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| T |
55939758 |
taatacaattagacagggtttcatatacagattccctttaactaaaaacatattacttagcatatttattagatgtaaaagactaatgtaaactaagaac |
55939659 |
T |
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| Q |
101 |
aatacacaacttgattttaggccgaatatcaaagaaaataacctaataaa-ccataaaacgagacaccatataatttataattaagtgtaatacaactaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55939658 |
aatacacaacttgattttaggccgaatatcaaagaaaataacctaataaacccataaaacgagacaccatataatttataattaagtgtaatacaactaa |
55939559 |
T |
|
| Q |
200 |
aactggatcaaacaatgctacaggtgaagagaagtatcaacacca |
244 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55939558 |
aactggattaaacaatgctacaggtgaagagaagtatcaacacca |
55939514 |
T |
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