View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_high_4 (Length: 240)
Name: NF8278_high_4
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_high_4 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 3873807 - 3873944
Alignment:
| Q |
98 |
caaacaaaaatggattatattaacagtgctatattatatagcagtcctcttagtataaggtgtatcgaaaagactactnnnnnnn-caagcagttcacat |
196 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3873807 |
caaacaaaaatggattatattaa-agtg-----ttatatagcagtccttttagtataaggtgtatcgaaaagactactaaaaaaaacaagcagttcacat |
3873900 |
T |
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| Q |
197 |
aaaatacaacaagtggttagtcaatgcctaaacacgacaatgga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3873901 |
aaaatacaacaagtggttagtcaatgcctaaacacgacaatgga |
3873944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 3873682 - 3873762
Alignment:
| Q |
18 |
gattaatcactgaaaatcaataggattaacatgttcaactatattcttcacaaacaacagaaaaataagttcatgaatatc |
98 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3873682 |
gattgatcactgaaaattaataggattaacatgttcaactatattcttcacaaacaacagaaaaataagttcatgaatatc |
3873762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 28381517 - 28381573
Alignment:
| Q |
183 |
caagcagttcacataaaatacaacaagtggttagtcaatgcctaaacacgacaatgga |
240 |
Q |
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| T |
28381517 |
caagcagttcaca-aaattacaacaagtggttaaccaatgcctaaacacgacaatgga |
28381573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 25388343 - 25388396
Alignment:
| Q |
183 |
caagcagttcacataaaatacaacaagtggttagtcaatgcctaaacacgacaa |
236 |
Q |
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| T |
25388343 |
caagcaattcacacagaatacaacaagtggctagccaatgtctaaacacgacaa |
25388396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 28449347 - 28449291
Alignment:
| Q |
183 |
caagcagttcacataaaatacaacaagtggttagtcaatgcctaaacacgacaatgg |
239 |
Q |
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||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
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| T |
28449347 |
caagcagttcacacaaggtacaaaaagtggttagtcaatgcctaaacacgacaatgg |
28449291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 35836763 - 35836819
Alignment:
| Q |
183 |
caagcagttcacataaaatacaacaagtggttagtcaatgcctaaacacgacaatgga |
240 |
Q |
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|||||| |||||| ||| ||||||||||||||| |||||||||| |||||||||||| |
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| T |
35836763 |
caagcatttcaca-aaattacaacaagtggttaaccaatgcctaagcacgacaatgga |
35836819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 87787 - 87731
Alignment:
| Q |
185 |
agcagttcacataaaatacaacaagtggt-tagtcaatgcctaaacacgacaatgga |
240 |
Q |
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||||||||||| ||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
87787 |
agcagttcacacgaaatacaacaaatagtctagtcaatgcctaaacacgacaatgga |
87731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 39298059 - 39298005
Alignment:
| Q |
183 |
caagcagttcacataaaatacaacaagtggttagtcaatgcctaaacacgacaatg |
238 |
Q |
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| T |
39298059 |
caagcagtttaca-aaattacaacaagtggttaaccaatgcctaaacacgacaatg |
39298005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 17874467 - 17874506
Alignment:
| Q |
201 |
tacaacaagtggttagtcaatgcctaaacacgacaatgga |
240 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
17874467 |
tacaacaagtggttaaccaatgcctaaacacgacaatgga |
17874506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 6985469 - 6985512
Alignment:
| Q |
197 |
aaaatacaacaagtggttagtcaatgcctaaacacgacaatgga |
240 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
6985469 |
aaaatacaacaagttgttatccaatgcctaaacacgacaatgga |
6985512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 8129518 - 8129561
Alignment:
| Q |
197 |
aaaatacaacaagtggttagtcaatgcctaaacacgacaatgga |
240 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
8129518 |
aaaatacaacaagttgttaaccaatgcctaaacacgacaatgga |
8129561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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