View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_low_1 (Length: 423)
Name: NF8278_low_1
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 40 - 408
Target Start/End: Complemental strand, 33299806 - 33299443
Alignment:
| Q |
40 |
tcgatcagatgctaaaatagtctaaacaaacatactcttaacttctgttcatgttgcataaatcgtcaatttagtccataaaattatagatgtatgatga |
139 |
Q |
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| T |
33299806 |
tcgatcagatgctaaactagtctaaaca----tactctcaacttctgtagatattgaataaatcgtcaatttagtccataaaactgtggatgtatgatga |
33299711 |
T |
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| Q |
140 |
tgacaatttaatctctgaaatcaccgaaattaaaaactgttgtttgaaattgaaaattctcgattaaatgttgtctttgatcttaccagttgccacataa |
239 |
Q |
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| T |
33299710 |
tgacaatttcacgtccgaaatcaccaaaatataaaattgttatctgaaattgaaaattctcgattaaatcctgtctttgatcttaccagttgccacataa |
33299611 |
T |
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| Q |
240 |
caggaagtcatagaaccaacgacattcattgttcctaacgctaccatttctctgtttccatctaactgataatccttcatagatgcaaatgttcttccga |
339 |
Q |
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| T |
33299610 |
catgaagtcatagaaccaacgacattcattgttcctaatgctaccatttctctgtttccatctaactgataatccttcatagatgcaaatgttcttccaa |
33299511 |
T |
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| Q |
340 |
tagctatggcttcctaaaaaccaaaatgcattggtttaattagaaaaatgttgaagtaaatggaaaaat |
408 |
Q |
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| T |
33299510 |
tagctatggcttcct-aaaaccaaaatgcaatggtttaattagaaaaatgttcaagtaaatggaaaaat |
33299443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 367
Target Start/End: Complemental strand, 25720953 - 25720805
Alignment:
| Q |
219 |
atcttaccagttgccacataacaggaagtcatagaaccaacgacattcattgttcctaacgctaccatttctctgtttccatctaactgataatccttca |
318 |
Q |
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| T |
25720953 |
atcttaccagttgctacatagcaggaagtcatcgaaccaacaacattcatagctcctaatgccaccatttctttgtttccatcgagttgatagtccttca |
25720854 |
T |
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| Q |
319 |
tagatgcaaatgttcttccgatagctatggcttcctaaaaaccaaaatg |
367 |
Q |
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|||| |||||||||||||| || ||||||||||||| | |||||||||| |
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| T |
25720853 |
tagaagcaaatgttcttcctattgctatggcttcctgataaccaaaatg |
25720805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 1494374 - 1494277
Alignment:
| Q |
246 |
gtcatagaaccaacgacattcattgttcctaacgctaccatttctctgtttccatctaactgataatccttcatagatgcaaatgttcttccgatagc |
343 |
Q |
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|||| ||||||||| || ||||||||||||| || |||||||||||||| ||||||| ||| || ||||||| |||||||||||||| ||||| |
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| T |
1494374 |
gtcaaagaaccaacaacgttcattgttcctagtgccaccatttctctgttaccatctagtgaatagtctttcatagcagcaaatgttcttccaatagc |
1494277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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